Tc09v2_t003530.1

Overview
NameTc09v2_t003530.1
Unique NameTc09v2_t003530.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1281
Properties
Property NameValue
NoteAspartate aminotransferase, cytoplasmic
Model evidenceSupporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productaspartate aminotransferase, cytoplasmic, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587937
GenbankXM_018127158.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g003530Tc09v2_g003530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p003530.1Tc09v2_p003530.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto427037auto427037Theobroma cacaoexon
exon-auto427038auto427038Theobroma cacaoexon
exon-auto427039auto427039Theobroma cacaoexon
exon-auto427040auto427040Theobroma cacaoexon
exon-auto427041auto427041Theobroma cacaoexon
exon-auto427042auto427042Theobroma cacaoexon
exon-auto427043auto427043Theobroma cacaoexon
exon-auto427044auto427044Theobroma cacaoexon
exon-auto427045auto427045Theobroma cacaoexon
exon-auto427046auto427046Theobroma cacaoexon
exon-auto427047auto427047Theobroma cacaoexon
exon-auto427048auto427048Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto427049auto427049Theobroma cacaoCDS
CDS-auto427050auto427050Theobroma cacaoCDS
CDS-auto427051auto427051Theobroma cacaoCDS
CDS-auto427052auto427052Theobroma cacaoCDS
CDS-auto427053auto427053Theobroma cacaoCDS
CDS-auto427054auto427054Theobroma cacaoCDS
CDS-auto427055auto427055Theobroma cacaoCDS
CDS-auto427056auto427056Theobroma cacaoCDS
CDS-auto427057auto427057Theobroma cacaoCDS
CDS-auto427058auto427058Theobroma cacaoCDS
CDS-auto427059auto427059Theobroma cacaoCDS
CDS-auto427060auto427060Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t003530.1 ID=Tc09v2_t003530.1|Name=Tc09v2_t003530.1|organism=Theobroma cacao|type=mRNA|length=1281bp
ATGGAGTATCTGAAGCTTAACGAGATGACCACAACTGACTCAACTGGCGA
TTCTCTGTTCCATAACGTACCTCCAGCTCCTGATATTCCAGTCTACGCGG
TACTGGCTTTTATGCTTTTTCCAATCGCTTACAATAAGGACCCCAGCACA
AATAAGCTGCACTTGGGGATTGGTGTTTATCGAACAGAGGACGGAAAATC
TCATACGCTGAATGTTGTTAGACAAGTGGAGCAGACACTAGCTAATGACC
TGTCTGCTGATAAGGAGTACCTTCCCAGAACAGGAATGGCAGAATTTAAT
AGATTAAGTGCTGAACTCATATTTGGTTCTGGCAGCCCTGCCATCAAGGA
GAGTAGAGTGACTACTGCCCAGTGTGTGTCAGGTTGTGGCTCACTGAGGC
TCGGGGCTGAATTTTTAGCACAACATTACCGCCAACTTGTGGTTTACCTT
CCTGAGCCAACATATGGAAATCATCCAAATTTGTTATCTGCAGCAGGACT
AGCTTTGAAGACTTACCGTTATTATGATCCTAAAACACGTGGGCTAGACT
TTCAAGGCCTTTTGGAAGATCTTGGCTCTGCCTTAACTGGAGCCATTGTG
CTTTTCCAAGCTAGTGGTCATAATCCTACTGGTGTTGATCCAACTTGTCA
GCAGTGGGAACAGATCAGGCAGTTAGTGAGACTGAGAGGCTTATTACCTT
TTTTTGATTGCGCTTATCAGGGTTTGGTAAGTGGAAGTCTAGATGCTGAT
GCACAGTCCATTCGGATGTTTGTTTGTGATGGTGGTGAAAGCCTTGTAGC
TCAATCATATTCAAAAACCATGGGACTCTATGGGGAACGCATTGGTTCGC
TTAGCATTGTTTGCAAGACGGCGGATGTGGCAAGGCGGGTTGAGAGCCAG
CTCAGGCTTGTGATCAGACCCCTTTATTCAAACCCACCCATTCATGGTGC
AGCCATAGTTACTGCCATTCTGAAGGATAGGGACTTGTACAACGAATGGA
CTAGTGAACTGAAAGCAATGAGTGATCGTCTAGCCAAAGTACGCCAGCAA
CTCTATGATGCTTTATGCAACAGAGGGACTCCAGGGGATTGGAGCCATAT
TATCAGGCAGGTCGGAATGTATACTTTCACCGGATTGAATGAAGAGCAAG
TCCGCTTCATGACTAAAGAATACCATATCTACATGTCATCTGATGGGAGG
ATTAACATGGGAGGCCTAAGTTCAAAAGCAGTTCCACATCTTGCGGATGC
AATACATGCTGCAGTTACTCGCATCATCTAA
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protein sequence of Tc09v2_p003530.1

>Tc09v2_p003530.1 ID=Tc09v2_p003530.1|Name=Tc09v2_p003530.1|organism=Theobroma cacao|type=polypeptide|length=427bp
MEYLKLNEMTTTDSTGDSLFHNVPPAPDIPVYAVLAFMLFPIAYNKDPST
NKLHLGIGVYRTEDGKSHTLNVVRQVEQTLANDLSADKEYLPRTGMAEFN
RLSAELIFGSGSPAIKESRVTTAQCVSGCGSLRLGAEFLAQHYRQLVVYL
PEPTYGNHPNLLSAAGLALKTYRYYDPKTRGLDFQGLLEDLGSALTGAIV
LFQASGHNPTGVDPTCQQWEQIRQLVRLRGLLPFFDCAYQGLVSGSLDAD
AQSIRMFVCDGGESLVAQSYSKTMGLYGERIGSLSIVCKTADVARRVESQ
LRLVIRPLYSNPPIHGAAIVTAILKDRDLYNEWTSELKAMSDRLAKVRQQ
LYDALCNRGTPGDWSHIIRQVGMYTFTGLNEEQVRFMTKEYHIYMSSDGR
INMGGLSSKAVPHLADAIHAAVTRII*
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