Tc09v2_t003510.1

Overview
NameTc09v2_t003510.1
Unique NameTc09v2_t003510.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3132
Properties
Property NameValue
NoteMyb-related protein 3R-1
Productmyb-related protein 3R-1
Model evidenceSupporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587935
GenbankXM_007011998.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g003510Tc09v2_g003510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p003510.1Tc09v2_p003510.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto426986auto426986Theobroma cacaoexon
exon-auto426987auto426987Theobroma cacaoexon
exon-auto426988auto426988Theobroma cacaoexon
exon-auto426989auto426989Theobroma cacaoexon
exon-auto426990auto426990Theobroma cacaoexon
exon-auto426991auto426991Theobroma cacaoexon
exon-auto426992auto426992Theobroma cacaoexon
exon-auto426993auto426993Theobroma cacaoexon
exon-auto426994auto426994Theobroma cacaoexon
exon-auto426995auto426995Theobroma cacaoexon
exon-auto426996auto426996Theobroma cacaoexon
exon-auto426997auto426997Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto426998auto426998Theobroma cacaoCDS
CDS-auto426999auto426999Theobroma cacaoCDS
CDS-auto427000auto427000Theobroma cacaoCDS
CDS-auto427001auto427001Theobroma cacaoCDS
CDS-auto427002auto427002Theobroma cacaoCDS
CDS-auto427003auto427003Theobroma cacaoCDS
CDS-auto427004auto427004Theobroma cacaoCDS
CDS-auto427005auto427005Theobroma cacaoCDS
CDS-auto427006auto427006Theobroma cacaoCDS
CDS-auto427007auto427007Theobroma cacaoCDS
CDS-auto427008auto427008Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t003510.1 ID=Tc09v2_t003510.1|Name=Tc09v2_t003510.1|organism=Theobroma cacao|type=mRNA|length=3132bp
ATGGAAGGTGATAGAACAATATCGACTCCTTCAGTTGGGCTCAGCATCAG
CGATGGTGCTCAGACAATGCGAGCTCTTCATGGGAGAACTAGTGGTCCTA
CAAGACGTTCTACAAAAGGACAATGGACAGCTGAAGAGGATGAGATTCTG
CGTAAAGCTGTTCAACGTTTCAAAGGAAAAAACTGGAAAAAGATAGCGGA
GTGTTTCAAGGATCGGACTGATGTACAGTGTTTACATAGGTGGCAAAAGG
TCTTGAATCCAGAACTTGTTAAAGGGCCATGGTCAAAAGAGGAGGATGAG
CTAATAATTGAGTTGGTGAACAAAATTGGGCCTAAAAAGTGGTCAACCAT
TGCTCAGCACTTACCTGGACGTATTGGAAAACAATGCAGAGAAAGGTGGC
ATAATCATCTTAATCCTGCCATAAACAAAGAGGCATGGACTCAGGAAGAA
GAGCTGGCTCTGATTCGTGCTCATCAGATTTTTGGGAACAGATGGGCAGA
GCTCACAAAGTTCTTGCCAGGAAGGACAGACAATGCTATAAAAAATCACT
GGAACAGTTCGGTAAAAAAGAAATTGGACTCTTACATAGCATCCGGCCTT
CTAGACCAATTTCAGTTCCCCCTTCTTGCAAATCAAAGCCAGCCTATGCC
TTCATCTTCTTCGAGGGTTCAGAGCAATGTAGATGATAGTGGTGCCAAAA
GTAGGACAGAAGCAGAGGACATATCAGAATGCAGCCAAGAATCGAGCATG
ATTGGCTGCTCTCAGTCTGCAAGTGATATGGCTAATGCTGCTGTAAATAC
AAGAGAGCAGCAATTCCACTTGTCTGAAATGCCTGGTGTGGCAAAGGAGA
AGAATTCCAGTCCAGCGCTATGTTCAGAAGAGTATTACCCATCTTTGGAA
GATGTCAATTTCTCCATTCCAGAAATATCTTGTGAAGCAGGGTACTCTGC
TAGTGGGGATTATCAGTTTAGTTTACCAAATCTACCTAATATTTCTTCCA
TAGAACTGGGGCAAGAATCATCAGGGTTGCCAACTCACTGTATAGATGCT
AGCGAAAGCCATGAAATGATGAATGCTGCATTTCAAACTTCTGTAGGATT
AAATGCTCCTACATCTTTTGTAAATATGGTTACAACTTCTGACAAACCAG
AGCATATGTTGATAACTGATGATGAATGTTGTAGGGTCCTATTCTCAGAG
GCAGTGAATGATGGATGCTTTGCCTCTGAAAATTTTACACAAGGATCTAA
TATTGTTGAACTGGGTGGCTGCACAAGTTCATCACTTTGTCAGGCTTCAG
ACATCCAAATATCTGAAACTGGAAGAACTCCAGCCTCACAATCTAATTGT
CCTTCAAGGTCTGAAGTATTGGCAACCTCATGCTGTCAATATTTTGTGTC
TCCGTCAGTTGCTTCAGTCGAGTATGGTTCACTTATGTCCGGCAGAGAGC
CCAGTCAGTTAAATGGTCAACCTTTTGGAACTCAAGAGCAGGAATTTACT
ATGAATGCATATGATGGCTTTATCTATACTAATGATGATCATACAGGTAA
TACAGACCTGCAAGAGCAATCATACCTTGCCAAGGATTCTCTGAAGTTGG
TTGCGGTGAATAGTTTTGGTTCAGAATCTGATGCAATGCAAACTTGTCCC
ACCGTGGATGATAAGCCAAACTTGCCTGAAGAACAAGATGTTGGAGCTCT
ATGTTATGAGCCACCTCGATTTCCAAGCTTGGATATTCCATTTTTCAGCT
GTGATCTTATACCATCTGGCAGTGATATGCAGCAAGAATATAGTCCCCTT
GGTATTCGCCAGCTGATGATGTCTTCTATGAACTGCATCACTCCATTTAG
GTTGTGGGATTCGCCATCTCGAGACGATAGTCCTGATGCTGTGCTAAAAA
GTGCTGCCAAAACTTTTACTGGTACACCATCCATATTGAAGAAACGCCAC
CGTGACCTTTTGTCACCTTTATCAGAAAGAAGAAGTGACAAAAAGCTGGA
AACTGACATGACATCCAGTTTGACTAAAGATTTCTCTCGTTTGGATGTTA
TGTTTGATGAGAGTGGGACTGGCAGCACATCTCAGCCTTCTCAATCTGAA
CCTAAAACCCACTCTGGTGCCTCCGTGGAAGAAAAAGAAAACCTATGTCA
AGCATTTGATGGGGAGCGAGACAATGGGGGAGATCGCACTGAATCGTTAG
ATGATAAAGCTCAGAAGAAAGATTCTAATGGAATTAATTCCCATGGGAAT
ATGAAAAAAGAAGCCTGCGATATTGATACAAAGGCCAAAACTGACGCTGA
TGCTTCCAATAAAGTTGTCCAACGGCCTTCAGCAGTGCTTATTGAGCATA
ATATAAATGATCTACTGTTGTTTTCTCCTGATCAAGTTGGTCTTAAAGTG
GACAGACCATTATTGGCTTCAAGCACACGAACTCCAAGAAATCAGTATCA
TAAAAGCTTTGGAGCTATATCAAATCAGGGTTTTGCTTCTGAATGCTTAT
CCGGAAATGCATGCATAGTTGTTAGCTCTCCTACTTTGAAAATAAAGAAC
AGCGAAGGCCACTCAATTGCTGTTACTACTGTGCAATGTGTGACTTCATC
AGCAACCGCAGAGAATTTGGTTGATAATGCTGGGATTGATGCTGCTATTG
AAAATCATAATATATTTGGTGAAACTCCATTCAAAAGAAGTATCGAATCC
CCATCAGCGTGGAAGTCTCCTTGGTTCATCAACTCTTTTGTTCCGGGTCC
AAGGATTGACACAGAAATAACAATCGAGGACATAGGATATCTTATGAGCC
CTGGGGATAGAAGCTATGATGCCATTGGGTTGATGAAGCAATTAAGTGAG
CATACCGCAGCTGCTTATGCTGATGCCTTGGAGGTTTTGGGAAATGAAAC
TCCGGAATCAATTGTAAAGGGAAGACGATCAAACAATCCTAACGTCAACG
AGGACAAGGAGAATAACCAGTTGGAAAGCCGGTCACATTTGGCTTCAAAT
ATCCTGGCAGAGCGCCGGACTCTTGATTTCAGCGAATGTGGAACACCTGG
AAAAGGAACTGAAAACGGGAAGTCGTCAACCTCCATGAGTAGTTTCTCAA
GCCCCTCCTATCTTTTGAAAGGTTGCAGATAG
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protein sequence of Tc09v2_p003510.1

>Tc09v2_p003510.1 ID=Tc09v2_p003510.1|Name=Tc09v2_p003510.1|organism=Theobroma cacao|type=polypeptide|length=1044bp
MEGDRTISTPSVGLSISDGAQTMRALHGRTSGPTRRSTKGQWTAEEDEIL
RKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDE
LIIELVNKIGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEE
ELALIRAHQIFGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYIASGL
LDQFQFPLLANQSQPMPSSSSRVQSNVDDSGAKSRTEAEDISECSQESSM
IGCSQSASDMANAAVNTREQQFHLSEMPGVAKEKNSSPALCSEEYYPSLE
DVNFSIPEISCEAGYSASGDYQFSLPNLPNISSIELGQESSGLPTHCIDA
SESHEMMNAAFQTSVGLNAPTSFVNMVTTSDKPEHMLITDDECCRVLFSE
AVNDGCFASENFTQGSNIVELGGCTSSSLCQASDIQISETGRTPASQSNC
PSRSEVLATSCCQYFVSPSVASVEYGSLMSGREPSQLNGQPFGTQEQEFT
MNAYDGFIYTNDDHTGNTDLQEQSYLAKDSLKLVAVNSFGSESDAMQTCP
TVDDKPNLPEEQDVGALCYEPPRFPSLDIPFFSCDLIPSGSDMQQEYSPL
GIRQLMMSSMNCITPFRLWDSPSRDDSPDAVLKSAAKTFTGTPSILKKRH
RDLLSPLSERRSDKKLETDMTSSLTKDFSRLDVMFDESGTGSTSQPSQSE
PKTHSGASVEEKENLCQAFDGERDNGGDRTESLDDKAQKKDSNGINSHGN
MKKEACDIDTKAKTDADASNKVVQRPSAVLIEHNINDLLLFSPDQVGLKV
DRPLLASSTRTPRNQYHKSFGAISNQGFASECLSGNACIVVSSPTLKIKN
SEGHSIAVTTVQCVTSSATAENLVDNAGIDAAIENHNIFGETPFKRSIES
PSAWKSPWFINSFVPGPRIDTEITIEDIGYLMSPGDRSYDAIGLMKQLSE
HTAAAYADALEVLGNETPESIVKGRRSNNPNVNEDKENNQLESRSHLASN
ILAERRTLDFSECGTPGKGTENGKSSTSMSSFSSPSYLLKGCR*
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