Tc09v2_t003430.3

Overview
NameTc09v2_t003430.3
Unique NameTc09v2_t003430.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length675
Properties
Property NameValue
NotePeroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productprotein Mpv17, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587926
GenbankXM_018127335.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g003430Tc09v2_g003430Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p003430.3Tc09v2_p003430.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto426819auto426819Theobroma cacaoexon
exon-auto426820auto426820Theobroma cacaoexon
exon-auto426821auto426821Theobroma cacaoexon
exon-auto426822auto426822Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto426823auto426823Theobroma cacaoCDS
CDS-auto426824auto426824Theobroma cacaoCDS
CDS-auto426825auto426825Theobroma cacaoCDS
CDS-auto426826auto426826Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t003430.3 ID=Tc09v2_t003430.3|Name=Tc09v2_t003430.3|organism=Theobroma cacao|type=mRNA|length=675bp
ATGGTACCAGAATTGCTTGGCAATCCACCCGGTGAAGACACAGGTTATAA
GCTCAGGCTTGATTTGGGGATTTGGAGACATAGCTGCTCAAACCATTACT
CATTCAACTGCCAAGAAACACCGTCATTTACAGTTTTGCATCAGTCGCCA
CTTGATGAAGGTCATGACATTCAGGAAGAGGATAAAGAATTAAAGATCAA
TTGGAAAAGAGTGGCTACAACAAGCTTGTTTGGGTTTGGATTTGTTGGAC
CAGTTGGCCATTACTGGTATGAAGGTTTGGACCGATATATAAGGTTAAGA
CTTTGTCTACAACCAAATTCTTTTCGTTTTGTGGCTACTAAAGTTGCAAT
TGATGGGTTCATCTTTGGGCCATTGGATTTACTTGTGTTTTTTACTTACA
TGGGATTTTCTGCTGGAAAGAGTTTCCCTCAAGTCAAGGAAAATGTAAAG
AGAGATTTTGTCCCAGCCTTAATGCTTGAAGGGGGTGTATGGCCAATTGT
ACAAGTTGCAAATTTTCGGTATATACCAGTGAGGTACCAACTACTATATG
TAAACTTCTTCTGCCTGTTGGATAGCTGTTTCTTGTCATGGATTGAGCAA
CAAGAGGATGCTCCTTGGAAGCAGTGGCTGAATTCTTTGCTACCTTCAAA
GGAGAAAAGGGGTCAGGGTGGATGA
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protein sequence of Tc09v2_p003430.3

>Tc09v2_p003430.3 ID=Tc09v2_p003430.3|Name=Tc09v2_p003430.3|organism=Theobroma cacao|type=polypeptide|length=225bp
MVPELLGNPPGEDTGYKLRLDLGIWRHSCSNHYSFNCQETPSFTVLHQSP
LDEGHDIQEEDKELKINWKRVATTSLFGFGFVGPVGHYWYEGLDRYIRLR
LCLQPNSFRFVATKVAIDGFIFGPLDLLVFFTYMGFSAGKSFPQVKENVK
RDFVPALMLEGGVWPIVQVANFRYIPVRYQLLYVNFFCLLDSCFLSWIEQ
QEDAPWKQWLNSLLPSKEKRGQGG*
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