Tc09v2_t002990.1

Overview
NameTc09v2_t002990.1
Unique NameTc09v2_t002990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2112
Properties
Property NameValue
NoteType-b response regulator, putative
Model evidenceSupporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Producttwo-component response regulator ARR18, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587881
GenbankXM_007011921.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g002990Tc09v2_g002990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p002990.1Tc09v2_p002990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto425505auto425505Theobroma cacaoexon
exon-auto425506auto425506Theobroma cacaoexon
exon-auto425507auto425507Theobroma cacaoexon
exon-auto425508auto425508Theobroma cacaoexon
exon-auto425509auto425509Theobroma cacaoexon
exon-auto425510auto425510Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto425511auto425511Theobroma cacaoCDS
CDS-auto425512auto425512Theobroma cacaoCDS
CDS-auto425513auto425513Theobroma cacaoCDS
CDS-auto425514auto425514Theobroma cacaoCDS
CDS-auto425515auto425515Theobroma cacaoCDS
CDS-auto425516auto425516Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t002990.1 ID=Tc09v2_t002990.1|Name=Tc09v2_t002990.1|organism=Theobroma cacao|type=mRNA|length=2112bp
ATGGCTGTGGAGGAGAAAATGGGTGGTTCTAATGGTGAAGATGGCGGCAA
GGACTGGTTTCCACTTGGTATGCGTGTTTTAGCAGTTGATGATGACCCTA
TTTGCCTCAAAGTTTTGGAAAATCTGCTTCGTAAATGTCAATATCACGTT
ACTACCACCAATCAGGCAATTACAGCCCTCAAAATGTTGAGGGAAAACAG
AAACAAATATGACTTGGTTATCAGTGATGTTAATATGCCTGATATGGATG
GCTTTAAGCTTCTTGAGCTTGTGGGGCTTGAAATGGACCTACCTGTAATC
ATGTTGTCAGCTCACAGTGATACCAAGCTTGTAATGAAGGGGATTACCCA
TGGTGCTTGTGACTACTTATTGAAGCCTGTTCGCATTGAGGAGCTAAAAA
ACATATGGCAACATGTGGTTAGAAGAAAGAAAACTGACTCTAAGGATCAA
ATTAAGGCCCCAAATCAAGATAAGGCTCGGGCAGGAAATGGAGAATTCGG
TCAAACATCAACAGGCAGTTCTGACCAAAAGGTCAATAAGAAGCGAAAGG
ACCAAAGTGAAGATGAGGAAGAAGAGGGTGAAGATAATGGACATGAGAAT
GATGACCCTTCAACTCAGAAGAAGCCTCGAGTTGTTTGGTCTGTAGAGCT
GCATAGGAAGTTTGTTGCAGCTGTCAACCAATTGGGTCTTGACAAGGCCG
TTCCAAAGAAAATTCTGGACCTGATGAATGTTGAAGGACTTACAAGGGAA
AATGTAGCAAGCCATCTACAGAAATATAGGCTTTACCTGAAACGACTCAG
CAGTGTTGCAACTCAGCAAGCAAACATGGCTGCTGCATTAGGCAGTAAAG
ATCCCTCTTACTTGCGCATGAGTTCACTAGATGGCTTTGGAGATTTTCGC
ACATTGACTGGACCTGGAAGGCTTTCGAGTGCTTCTCTATCCTCGTACCA
ACCGGCTGGAATGTTTGGTAGACTGAACTCCTCAGCTGCTTTAAGCCTAC
GTGGGATTTCTTCTGGTGTCATTCAACAGGGACATTCTCAAACCTTGAAC
AATTCTATCAATGGTCTTGGGAAGATTCAGCCAGCTGTGTTGCCTGCAAA
CCAAAATCAAAATGGAACTTTGTTTCAAGGGATCCCAACCTCAATAGAGC
TCAACCAGCTGTCACAGAACAAGTCCACTAACCACTTTGGAGAATTTAAT
CGTGTTAATGATCCAAATGTTTTTGGTGTTGCCACTAACTTCTTTGATGC
CAGAGTGCCAGGTGGTAGCTCAAGCAATTCTCTATCTACTGCCTCAGGCA
ACCCTTTGTTGTTACAAGCAAACACACAACAGACACACACTAGTGGTTCA
TTTGGAAATCAATCATCTCATGGTGTGGCATCACTGAATCAGGAATCATT
TGACATGGGTGTTCGTGGTTCTTCTAATTTTCTTGATCATGGTAGATGCA
GTGAAAACTGGCAGGGCGCAGTTCAATTATCCAGTTTCCCATCAAGTTCA
TTGTCAACAAGTGAAGCTTTCAATCACGAGCAGTTGCCACCTAATAATTT
GCAGGAAAATCTCTCTTGGACGAGCTCTCATGTTAGTAACAGCCCTATTG
ATCTTTCTTCTTCCATGGCAAATTCAGCACGTTTGGATGACTCTAGAGGA
GACATGCAGTGCCAAGTTGGCCTAAATAATAATGTTATCCAGAATATGGG
TTACACGGCAAAGCAACAGTGGGGAGACCGCAGACATGATTACAATGGAA
ATTTAAATAATTCATTTAGCAGGCTGGACTCCCTCATTTCTGCAAGTGGT
GCTATGATGGACCAAAGTAATGCCGTCACCAGTAAAAGGACTGATGTCTC
TTTGTTCAGTCAGTTAAGTGGTGATGCTCCTTATGTTGTTCAGCACCCTG
AGGGTGAGAAATCAGCTTTTGACGCAAAATTGAGGTCCAATGAGGACTAT
CTCTTCGAGCAGACAAAGCCACAAAGTGGTTTCAGTCAAAATAATTTTGA
ATCCTTGGAGGATATAATGAGTTCCATGATCAAACAGGGACAAAATAATG
AGACAGCGTTGATGGATGGGGAATTTGGGTTTGATGCATACCCCCTTGGG
TCATGTATATGA
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protein sequence of Tc09v2_p002990.1

>Tc09v2_p002990.1 ID=Tc09v2_p002990.1|Name=Tc09v2_p002990.1|organism=Theobroma cacao|type=polypeptide|length=704bp
MAVEEKMGGSNGEDGGKDWFPLGMRVLAVDDDPICLKVLENLLRKCQYHV
TTTNQAITALKMLRENRNKYDLVISDVNMPDMDGFKLLELVGLEMDLPVI
MLSAHSDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKTDSKDQ
IKAPNQDKARAGNGEFGQTSTGSSDQKVNKKRKDQSEDEEEEGEDNGHEN
DDPSTQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRE
NVASHLQKYRLYLKRLSSVATQQANMAAALGSKDPSYLRMSSLDGFGDFR
TLTGPGRLSSASLSSYQPAGMFGRLNSSAALSLRGISSGVIQQGHSQTLN
NSINGLGKIQPAVLPANQNQNGTLFQGIPTSIELNQLSQNKSTNHFGEFN
RVNDPNVFGVATNFFDARVPGGSSSNSLSTASGNPLLLQANTQQTHTSGS
FGNQSSHGVASLNQESFDMGVRGSSNFLDHGRCSENWQGAVQLSSFPSSS
LSTSEAFNHEQLPPNNLQENLSWTSSHVSNSPIDLSSSMANSARLDDSRG
DMQCQVGLNNNVIQNMGYTAKQQWGDRRHDYNGNLNNSFSRLDSLISASG
AMMDQSNAVTSKRTDVSLFSQLSGDAPYVVQHPEGEKSAFDAKLRSNEDY
LFEQTKPQSGFSQNNFESLEDIMSSMIKQGQNNETALMDGEFGFDAYPLG
SCI*
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