Tc09v2_t002170.1

Overview
NameTc09v2_t002170.1
Unique NameTc09v2_t002170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1005
Properties
Property NameValue
NotePutative L-ascorbate peroxidase 6
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productputative L-ascorbate peroxidase 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587790
GenbankXM_018126529.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g002170Tc09v2_g002170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p002170.1Tc09v2_p002170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto424153auto424153Theobroma cacaoexon
exon-auto424154auto424154Theobroma cacaoexon
exon-auto424155auto424155Theobroma cacaoexon
exon-auto424156auto424156Theobroma cacaoexon
exon-auto424157auto424157Theobroma cacaoexon
exon-auto424158auto424158Theobroma cacaoexon
exon-auto424159auto424159Theobroma cacaoexon
exon-auto424160auto424160Theobroma cacaoexon
exon-auto424161auto424161Theobroma cacaoexon
exon-auto424162auto424162Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto424163auto424163Theobroma cacaoCDS
CDS-auto424164auto424164Theobroma cacaoCDS
CDS-auto424165auto424165Theobroma cacaoCDS
CDS-auto424166auto424166Theobroma cacaoCDS
CDS-auto424167auto424167Theobroma cacaoCDS
CDS-auto424168auto424168Theobroma cacaoCDS
CDS-auto424169auto424169Theobroma cacaoCDS
CDS-auto424170auto424170Theobroma cacaoCDS
CDS-auto424171auto424171Theobroma cacaoCDS
CDS-auto424172auto424172Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t002170.1 ID=Tc09v2_t002170.1|Name=Tc09v2_t002170.1|organism=Theobroma cacao|type=mRNA|length=1005bp
ATGATGAGTTCATCAGCAACCTCGAGTTCCTCTCCCTTCTCTTCCACCTC
TACTTTCTCTTCATCTAAATTCAAATTCAAATTTCCCTCCCTTTCCCAAC
GGTCCTCTCTCCTAACGGTCGAATCTCGCGCCAAGCCATCCACGGCTTGT
TCTTCCACCATCCGCGACGCCTCAGGACAAATTCGCCATTGCAGCTTGAG
TCGGAGGAGAGGGCTGGCCTTTACAGCAACGCTGCCGTTTCTTTTCCCTC
TGCATGAATTTGTGGGTAATGGTGGCGCTAAGGCAATTGAGTCAGGTCAG
AGAGAGTATCTGCGTATAAAGGAAGAGATAAGCAAAGTTGTAACCAAGGG
GAAGGCTGCCGGTGTTCTTCGCTTAGTATTTCATGACGCTGGAACCTTTG
AAATGGCTGAAAATTCAGGTGGTATGAATGGTTCTATAGTTTATGAACTT
GAAAGACCTGAAAACGCTGGCCTCAAAAAGTCTCTGAAGGTTCTGGAGAA
AGCAAAGAAAGAAGTGGATGCAATACAACCAGTATCATGGGCAGACATGA
TTGCTGTGGGTGGAGCTGAAGCAGTTTCTGTTTGTGGAGGTCCGAAAATC
CCTGTTGCATTAGGCAGACTAGATTCTGCGGAGCCAGATCCTGAAGGGAA
GCTTCCCCAAGAATCTCTGGATGCTTCTGGCTTAAAGCAGTCATTTCAAC
GAAAGGGCTTCTCAACACAAGAACTAGTTGCTCTATCTGGGGCTCACACT
CTCGGGAGTAAAGGTTTTGGAAGTCCAGTTGCTTTTGATAACTCATACTT
CAAAATTCTTATGGAGAAACCATGGAAGTCTTCAGCTGGTATGTCAAGCA
TGATCGGGCTTCCTTCAGATCATGCCATTGTAGAGGATGATGAATGCTTA
AGGTGGATCACAAAATACTCAGACAATCAGAATATATTCTTCGAAGATTT
TAAGAATGCTTATATCAAACTTGTGAATTCTGGTGCAAGGTGGAAAAGCA
TGTGA
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protein sequence of Tc09v2_p002170.1

>Tc09v2_p002170.1 ID=Tc09v2_p002170.1|Name=Tc09v2_p002170.1|organism=Theobroma cacao|type=polypeptide|length=335bp
MMSSSATSSSSPFSSTSTFSSSKFKFKFPSLSQRSSLLTVESRAKPSTAC
SSTIRDASGQIRHCSLSRRRGLAFTATLPFLFPLHEFVGNGGAKAIESGQ
REYLRIKEEISKVVTKGKAAGVLRLVFHDAGTFEMAENSGGMNGSIVYEL
ERPENAGLKKSLKVLEKAKKEVDAIQPVSWADMIAVGGAEAVSVCGGPKI
PVALGRLDSAEPDPEGKLPQESLDASGLKQSFQRKGFSTQELVALSGAHT
LGSKGFGSPVAFDNSYFKILMEKPWKSSAGMSSMIGLPSDHAIVEDDECL
RWITKYSDNQNIFFEDFKNAYIKLVNSGARWKSM*
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