Tc09v2_t001480.1

Overview
NameTc09v2_t001480.1
Unique NameTc09v2_t001480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2007
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 5
NoteTranscription initiation factor TFIID subunit 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587715
GenbankXM_018127712.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g001480Tc09v2_g001480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p001480.1Tc09v2_p001480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto422414auto422414Theobroma cacaoexon
exon-auto422415auto422415Theobroma cacaoexon
exon-auto422416auto422416Theobroma cacaoexon
exon-auto422417auto422417Theobroma cacaoexon
exon-auto422418auto422418Theobroma cacaoexon
exon-auto422419auto422419Theobroma cacaoexon
exon-auto422420auto422420Theobroma cacaoexon
exon-auto422421auto422421Theobroma cacaoexon
exon-auto422422auto422422Theobroma cacaoexon
exon-auto422423auto422423Theobroma cacaoexon
exon-auto422424auto422424Theobroma cacaoexon
exon-auto422425auto422425Theobroma cacaoexon
exon-auto422426auto422426Theobroma cacaoexon
exon-auto422427auto422427Theobroma cacaoexon
exon-auto422428auto422428Theobroma cacaoexon
exon-auto422429auto422429Theobroma cacaoexon
exon-auto422430auto422430Theobroma cacaoexon
exon-auto422431auto422431Theobroma cacaoexon
exon-auto422432auto422432Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto422433auto422433Theobroma cacaoCDS
CDS-auto422434auto422434Theobroma cacaoCDS
CDS-auto422435auto422435Theobroma cacaoCDS
CDS-auto422436auto422436Theobroma cacaoCDS
CDS-auto422437auto422437Theobroma cacaoCDS
CDS-auto422438auto422438Theobroma cacaoCDS
CDS-auto422439auto422439Theobroma cacaoCDS
CDS-auto422440auto422440Theobroma cacaoCDS
CDS-auto422441auto422441Theobroma cacaoCDS
CDS-auto422442auto422442Theobroma cacaoCDS
CDS-auto422443auto422443Theobroma cacaoCDS
CDS-auto422444auto422444Theobroma cacaoCDS
CDS-auto422445auto422445Theobroma cacaoCDS
CDS-auto422446auto422446Theobroma cacaoCDS
CDS-auto422447auto422447Theobroma cacaoCDS
CDS-auto422448auto422448Theobroma cacaoCDS
CDS-auto422449auto422449Theobroma cacaoCDS
CDS-auto422450auto422450Theobroma cacaoCDS
CDS-auto422451auto422451Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t001480.1 ID=Tc09v2_t001480.1|Name=Tc09v2_t001480.1|organism=Theobroma cacao|type=mRNA|length=2007bp
ATGGATAATATGCAGGCAGTGAATAGCTTCGTGGCAGCTTATCTGAAGAA
GAAAGGATTCAAGGAAGCGGAGCAATTGTTGGAGGATCTTCAGAGCAAGG
ATTCCGCTCCCATCGATTTCCACAACGACCCCGAACTCGCTAAGTTCATT
CACCACTTCTCCCAATCGGAGGATGATGTGGTACGCTACCAGGATGGATA
TAGCAAACTGAGGTCTTGGACTTATAGTTCACTAGATTTATATAAGCATG
AGTTGCTTCGTGTGCTTTATCCTGTCTTTATACATTCATTCATGGATCTG
GTGGCAAAAGGACATCTGCAAGAGGCTAGAACATTTTTTAATGCCTTTCG
TGAAGACCATGAACTGATGCACTCACGTGACCTTCAAAAGCTGGAAGGAG
TTCTCACTCAGTCTCATTTGGAGGAGATGGAATTTGCTCGTTCTCTTAGG
CAGAATAAAGTTAACATCAAGATATGTCAGTATTCCTACGACCTTCTGCT
GCAGTATTTGCATAAAACACAGTCCACTGCTATGCTTGGGGTTATTAATG
AACACATCAACTTCCAAGTTTCTCCTGGACAGCCCACTTCAATTTCTGAT
GATGCAGAGGTTGTAACACTTATTGGAAGCTGCCAGGATGCAGCTAATCA
GATAAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCCTTAGAAG
AACGCTTGGAGAAAGCAGGAGGTTTGCTTTCAGATTCTGAAAAGACAGAA
GGGGAGAACAAAGAGGGGGATGTAGATGAGACTAAGAAAAGATCAGTTGA
AGGTGGAAAGCAAGGTGCTTCAACTAAAAAGTTGAAAAAGGACAAAGCTG
CTAGTGCAACAGCAAAAAGTGCTCGCCCTGAGGCTAACACCACCTCCACT
GCACCCCGAGTAAAACCAGAGCTCCCTTTGCCAGTAATGCCAACAGAGGT
AGAACAGTCAATTCTTGAGGACTTAAGAAACCGTGTACAGTTGAGTAGTG
TTGCATTGCCATCTGTCAGCTTTTACACTTTTCTCAACACACATAACGGT
TTGAACTGTTCATCAATTTCGCATGATGGGTCTTTGGTTGCTGGTGGATT
CTCAGACTCGTCATTGAAGATTTGGGATATGGCAAAGCTAGGCCAGCAAG
CTGGCAGTTCTATTTTGCAGGGTGAAAATGATTCTACTTCAAGTAAACAT
GTTGTGGGACCAAATGGTGTGAAAAGATCCTATACATTGTTGCAGGGTCA
CTCAGGACCAGTTTATTCAGCCAACTTTAGTCCTCTTGGGGATTTTATTC
TTTCCTCTTCTGCAGATACAACAATTCGCCTGTGGAGCACAGAACTAAAT
GCAAATCTTGTTTGCTACAAGGGTCATAATTATCCTGTATGGGATGTTCA
GTTTAGTCCTGTAGGACACTATTTTGCCAGTGCTTCGCATGATCGAACAG
CAAGGATTTGGTCGATGGATAAAATACAACCTATGAGGATAATGGCAGGG
CACTTGTCTGATGTCGATTGTGTGCAATGGCATGCCAACTGCAACTATAT
TGCCACTGGCTCTAGTGACAAAACAGTTAGATTGTGGGATGTGCAAAGTG
GAGAATGTGTTCGGATTTTCATTGGTCATAGGAGTATGATTTTGTCATTA
GCAATGTCACCTGACGGTCGATATATGGCATCTGGTGATGAAGATGGCAC
AATCATGATGTGGGACCTGTCTAGTGGACGCTGCGTTACACCTTTGATGG
GTCACAGCTCGTGTGTGTGGACGCTTGCTTTCAGTTGTGAAGGTTCACTT
CTGGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAACAAC
AAGCACAAAGGTCCCAAAGAATGAAGAAAAGAGTGGAAATCCAAACAGAC
TAAGATCGTTGAAAACCTTGCCAACCAAGCTTACTCCAGTTTATAGTTTG
CGGTTTTCCAGAAGGAATCTGCTGTTTGCAGCTGGGGCGCTCTCTAAGAA
CCAGTAA
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protein sequence of Tc09v2_p001480.1

>Tc09v2_p001480.1 ID=Tc09v2_p001480.1|Name=Tc09v2_p001480.1|organism=Theobroma cacao|type=polypeptide|length=669bp
MDNMQAVNSFVAAYLKKKGFKEAEQLLEDLQSKDSAPIDFHNDPELAKFI
HHFSQSEDDVVRYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDL
VAKGHLQEARTFFNAFREDHELMHSRDLQKLEGVLTQSHLEEMEFARSLR
QNKVNIKICQYSYDLLLQYLHKTQSTAMLGVINEHINFQVSPGQPTSISD
DAEVVTLIGSCQDAANQINQKEIHWGLLEDSLEERLEKAGGLLSDSEKTE
GENKEGDVDETKKRSVEGGKQGASTKKLKKDKAASATAKSARPEANTTST
APRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNG
LNCSSISHDGSLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKH
VVGPNGVKRSYTLLQGHSGPVYSANFSPLGDFILSSSADTTIRLWSTELN
ANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQPMRIMAG
HLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSL
AMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVWTLAFSCEGSL
LASGSADCTVKLWDVTTSTKVPKNEEKSGNPNRLRSLKTLPTKLTPVYSL
RFSRRNLLFAAGALSKNQ*
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