Tc09v2_t001410.3

Overview
NameTc09v2_t001410.3
Unique NameTc09v2_t001410.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length777
Properties
Property NameValue
NoteChorismate mutase 2
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productchorismate mutase 2, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587708
GenbankXM_018128387.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g001410Tc09v2_g001410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p001410.3Tc09v2_p001410.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto422193auto422193Theobroma cacaoexon
exon-auto422194auto422194Theobroma cacaoexon
exon-auto422195auto422195Theobroma cacaoexon
exon-auto422196auto422196Theobroma cacaoexon
exon-auto422197auto422197Theobroma cacaoexon
exon-auto422198auto422198Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto422199auto422199Theobroma cacaoCDS
CDS-auto422200auto422200Theobroma cacaoCDS
CDS-auto422201auto422201Theobroma cacaoCDS
CDS-auto422202auto422202Theobroma cacaoCDS
CDS-auto422203auto422203Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t001410.3 ID=Tc09v2_t001410.3|Name=Tc09v2_t001410.3|organism=Theobroma cacao|type=mRNA|length=777bp
ATGGCGAAAGCAGAGTCCAATGTTAGCGATGGGTTGACGCTAGAATTGAT
AAGAGAGTCATTAATCAGGCAAGAAGACACCATTGTTTTCAGTCTCATAG
AGAGAGCTAGGTTCCCTTTAAATTCTCCAACCTACGACAAATCTTACGCT
TCTTCTGTTCCTGGGTCCTGCGGCTCTCTGGTTGAGTTCATTGTGAAAGA
AACAGAGGCCATCCAAGCCAAGGCTGGGAGATATGAGAATCCTGAGGAAC
ATCCATTCTTCCCAGATAATCTACCACCCTTACAGGTGCCACCTCACAAG
TATCCTGAGGTTTTGCATCCTGCAGCCATGTCTGTTAACATAAATAAGAT
CATATGGGATATGTATTTCAATGAACTGCTTCCATTGTTTGTCACCCCGG
GTGATGATGGAAACTATGCATCAACAGCTACTCGTGATCTTGAGTGTTTA
CAGGCCCTCTCCAGGAGAATACATTATGGAAAACTTGTAGCTGAAGTTAA
ATTCAGAGATGAAAGGAAAGACTATGAGCCAGCAATTCGTGCTCAGGATA
GAGATACCCTGATCAATTTGCTGACCTTTGCTCGAGTGGAAGAAGCAGTG
AAGAAGAGGGTAGAGAAGAAGGCAATGACATTTGGCCAGGAAGTGAAGCT
CGGTGATGAGGGCAACAAGGGGAAGTACAAAGTAAATCCAGCCATTGTTT
CCCGGCTCTATGGAGATTGGGTGATTCCCCTGACAAAGGATGTTGAAGTT
GAGTACCTCCTCCATCGCCTTGACTGA
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protein sequence of Tc09v2_p001410.3

>Tc09v2_p001410.3 ID=Tc09v2_p001410.3|Name=Tc09v2_p001410.3|organism=Theobroma cacao|type=polypeptide|length=259bp
MAKAESNVSDGLTLELIRESLIRQEDTIVFSLIERARFPLNSPTYDKSYA
SSVPGSCGSLVEFIVKETEAIQAKAGRYENPEEHPFFPDNLPPLQVPPHK
YPEVLHPAAMSVNINKIIWDMYFNELLPLFVTPGDDGNYASTATRDLECL
QALSRRIHYGKLVAEVKFRDERKDYEPAIRAQDRDTLINLLTFARVEEAV
KKRVEKKAMTFGQEVKLGDEGNKGKYKVNPAIVSRLYGDWVIPLTKDVEV
EYLLHRLD*
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