Tc09v2_t001280.1

Overview
NameTc09v2_t001280.1
Unique NameTc09v2_t001280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length720
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 13 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphospholipid hydroperoxide glutathione peroxidase 1, chloroplastic
NotePhospholipid hydroperoxide glutathione peroxidase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587695
GenbankXM_018127396.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g001280Tc09v2_g001280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p001280.1Tc09v2_p001280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto421905auto421905Theobroma cacaoexon
exon-auto421906auto421906Theobroma cacaoexon
exon-auto421907auto421907Theobroma cacaoexon
exon-auto421908auto421908Theobroma cacaoexon
exon-auto421909auto421909Theobroma cacaoexon
exon-auto421910auto421910Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto421911auto421911Theobroma cacaoCDS
CDS-auto421912auto421912Theobroma cacaoCDS
CDS-auto421913auto421913Theobroma cacaoCDS
CDS-auto421914auto421914Theobroma cacaoCDS
CDS-auto421915auto421915Theobroma cacaoCDS
CDS-auto421916auto421916Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t001280.1 ID=Tc09v2_t001280.1|Name=Tc09v2_t001280.1|organism=Theobroma cacao|type=mRNA|length=720bp
ATGGCTTCCATGCCTTTCTCTGCAACTTTTCCTTCTTATCTTCATGACTT
GTCTCAAACCAAAAAGATCCCAGTTATGCCTTCTTCATGGCCTTTCTCGA
TTCCTTCCATTGAATCATCGCTTGGGTCTTCGAAATCAGGCTTTTTGCAA
CATGGGTTCTCTTTGCAGTCCTCTTCTGTTCCTGGGTTTGTCTTCAAATC
TAGATCTTCAGGGATTTATGCAAGAGCAGCTACAGAGAAGACTCTGTACG
ACTATACTGTGAAGGATATTGATGGGAAGGATGTTTCTCTTAGCAGATTT
AAGGGAAAAGTTCTCTTGATTGTTAATGTTGCTTCAAAATGTGGTTTGAC
GACATCAAATTACTCTGAGCTTTCCCACATATATGAGAAATACAAGACTC
AAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTCGGGGGACAAGAG
CCTGGATCAAATCCTGAGATTAAACAATTTGCCTGTACCAGGTTCAAAGC
AGAATTTCCAATATTTGATAAGGTTGATGTGAATGGACCAAACACAGCTC
CCGTTTACCAATTCCTGAAGTCGAATGCAGGTGGATTTTTAGGTGACTTG
GTCAAGTGGAATTTTGAGAAGTTCTTGGTGGACAAAAATGGCAAAGTTGT
CGAGAGGTATCCACCAACAATATCGCCTTTCCAAATTGAGAAGGACATTC
AGAAGCTCCTTGCGGCATGA
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protein sequence of Tc09v2_p001280.1

>Tc09v2_p001280.1 ID=Tc09v2_p001280.1|Name=Tc09v2_p001280.1|organism=Theobroma cacao|type=polypeptide|length=240bp
MASMPFSATFPSYLHDLSQTKKIPVMPSSWPFSIPSIESSLGSSKSGFLQ
HGFSLQSSSVPGFVFKSRSSGIYARAATEKTLYDYTVKDIDGKDVSLSRF
KGKVLLIVNVASKCGLTTSNYSELSHIYEKYKTQGFEILAFPCNQFGGQE
PGSNPEIKQFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSNAGGFLGDL
VKWNFEKFLVDKNGKVVERYPPTISPFQIEKDIQKLLAA*
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