Tc09v2_t000960.1

Overview
NameTc09v2_t000960.1
Unique NameTc09v2_t000960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length411
Properties
Property NameValue
NoteTranscription initiation factor TFIID subunit 10
Model evidenceSupporting evidence includes similarity to: 16 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 10
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587658
GenbankXM_007011581.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g000960Tc09v2_g000960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p000960.1Tc09v2_p000960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto421145auto421145Theobroma cacaoexon
exon-auto421146auto421146Theobroma cacaoexon
exon-auto421147auto421147Theobroma cacaoexon
exon-auto421148auto421148Theobroma cacaoexon
exon-auto421149auto421149Theobroma cacaoexon
exon-auto421150auto421150Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto421151auto421151Theobroma cacaoCDS
CDS-auto421152auto421152Theobroma cacaoCDS
CDS-auto421153auto421153Theobroma cacaoCDS
CDS-auto421154auto421154Theobroma cacaoCDS
CDS-auto421155auto421155Theobroma cacaoCDS
CDS-auto421156auto421156Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t000960.1 ID=Tc09v2_t000960.1|Name=Tc09v2_t000960.1|organism=Theobroma cacao|type=mRNA|length=411bp
ATGAACCATAACCCGCAATCCGGCGACGGGAAGCATGACGACGACACTGC
TCTCTCCGATTTCCTCGCCTCTCTCATGGAATACACTCCCACAATACCTG
ACGAATTGGTGGAACATTACTTAGCCAAGAGTGGTGTTCAATGTCCTGAT
GTTCGATTAATAAGGCTTGTAGCTGTTGCTACTCAGAAGTTTGTTGCAGA
GGTTGCAAGTGATGCACTTCAGCATTGCAAGGCAAGGCAGGCTTCAGTCA
TCAAAGACAAAAGGGACAAGCAGCAAAAGGATAAGCGCCTAATCTTGACA
ATGGAGGACCTCTCAAAGTCATTGCGTGAGTATGGAGTGAATGTGAAGCA
CCAGGAGTATTTTGCTGATAGCCCATCAACCGGAATCGATCCTGCTTCTA
GAGATGAATAG
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protein sequence of Tc09v2_p000960.1

>Tc09v2_p000960.1 ID=Tc09v2_p000960.1|Name=Tc09v2_p000960.1|organism=Theobroma cacao|type=polypeptide|length=137bp
MNHNPQSGDGKHDDDTALSDFLASLMEYTPTIPDELVEHYLAKSGVQCPD
VRLIRLVAVATQKFVAEVASDALQHCKARQASVIKDKRDKQQKDKRLILT
MEDLSKSLREYGVNVKHQEYFADSPSTGIDPASRDE*
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