Tc09v2_t000530.3

Overview
NameTc09v2_t000530.3
Unique NameTc09v2_t000530.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2115
Properties
Property NameValue
NotePutative Elongation factor 1-alpha
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
ProductHBS1-like protein, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587615
GenbankXM_007011516.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g000530Tc09v2_g000530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p000530.3Tc09v2_p000530.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto420376auto420376Theobroma cacaoexon
exon-auto420377auto420377Theobroma cacaoexon
exon-auto420378auto420378Theobroma cacaoexon
exon-auto420379auto420379Theobroma cacaoexon
exon-auto420380auto420380Theobroma cacaoexon
exon-auto420381auto420381Theobroma cacaoexon
exon-auto420382auto420382Theobroma cacaoexon
exon-auto420383auto420383Theobroma cacaoexon
exon-auto420384auto420384Theobroma cacaoexon
exon-auto420385auto420385Theobroma cacaoexon
exon-auto420386auto420386Theobroma cacaoexon
exon-auto420387auto420387Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto420388auto420388Theobroma cacaoCDS
CDS-auto420389auto420389Theobroma cacaoCDS
CDS-auto420390auto420390Theobroma cacaoCDS
CDS-auto420391auto420391Theobroma cacaoCDS
CDS-auto420392auto420392Theobroma cacaoCDS
CDS-auto420393auto420393Theobroma cacaoCDS
CDS-auto420394auto420394Theobroma cacaoCDS
CDS-auto420395auto420395Theobroma cacaoCDS
CDS-auto420396auto420396Theobroma cacaoCDS
CDS-auto420397auto420397Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t000530.3 ID=Tc09v2_t000530.3|Name=Tc09v2_t000530.3|organism=Theobroma cacao|type=mRNA|length=2115bp
ATGCCTCGGAAAGTTAACTATGGGGTTGATTACGATGATGATGATGATTA
TGATGACTATGATGAATATGACTATGGCTATGAAGTAGAAGAAAACGTGG
AAGCACCTTCTGAGGAAGAAACTATCAATCATGGTGTGTGGCGTTGCTCC
ATTTGTACTTACGATAATGATGCAACCTTGTCAGCATGTGATATTTGTGG
GGTTCTTCGCAGTCCTTTGGTCAACAACTCCACCTATGATGGGAAGAAAA
CAGCCCCTTTCAAGTTTGATGTTCCATCTCCAGATGATGTGGTTTCCAAT
GGACTGCGTTCCTCCAAATTGGGTTCGAAAGCCAACATTTTTGACTCAAA
ATCTTCCAAAGTTTCCTCAAGTGTGGTCGGGAAGAATGAGGCAGCTAAAG
TACAATTAAGTACTAAAAGGTCAGGTAGTTCATATGACTCAACAGCAAAA
GACAAGCACAATAGACTGGATGAGATAATTTCTTCGAAGAATCTAGAAGT
TGATGCATTGTCAAGTTCCAGAAACTCAGATAACTCCTCTGCATCAATGC
CAAAAGGCAGGATTGATATTGTGGATGAAAGCATTGTTGTGGATAATCTG
CGATCTAGCGTTAAAAGGTCATCATTGATGCCAAAAGAAATACATAATAT
GGTGGATGATAGCAGCTCTTCAAGGAATGGAGGTGAGGCACATAGTCTCA
CCAGTAATGTGAAAAACATGTCTTTGGCTGCTAAATCCGGGCACTCAAAG
GATACAAGTGCTGGAAGAGCAAATTCATATGCTCAGTATAAACCAGAAGA
GTGGATGCTCCCTGAAAAAGCAGAAGATTCACTGACTCAACTGAATCTTG
CAATTGTTGGGCATGTTGATTCCGGAAAATCAACACTCTCTGGTAGACTG
CTTCACCTTTTGGGACGAATATCCCAAAAAGAAATGCACAAATATGAAAA
GGAGTCAAAATTGCAGGGCAAAGGATCCTTTGCTTATGCTTGGGCGTTGG
ATGAGAGTGCTGAAGAAAGGGAAAGGGGAATCACTATGACTGTGGCTGTG
GCTTATTTTGATTCAAAAAGATATCATGTTGTTGTCCTTGATTCCCCAGG
GCACAAAGATTTTGTTCCAAACATGATAACTGGAGCAACACAAGCTGATG
CTGCAATTCTTGTCGTAGATGCTTCTATTGGTTCATTTGAAGCTGGTATG
GACGGCGCAAAAGGACAGACAAGGGAGCATGCACAACTCATCAGAAGTTT
TGGTGTTGATCAAATTATAGTTGCAGTTAACAAGATGGATACTGTAGAGT
ATTCTAAGAATCGATTTGACTTTTTAAAATCACAGCTTTGGACATTTCTC
CGCTCTTGTGGTTTCAAGGATTCCTCTGTTTCATGGATTCCACTGAGTGT
TGTAGAAAATCAGAATTTAGTGGCTGCACCTTCTGACGTTCGTTTATCGT
GGTATCATGGACCTTATCTATTAGATGCAATTGATTCCTTCCAACCTCCT
ACAAGAGATTTTTCAAAGCCTCTACTTATTCCTATATGTGATGTTATAAG
ATCACCTTCACAGGGGCAGGTGTCTGCTTGTGGCAAGTTGGAGGCTGGAG
CTGTTCGAAGTGGATCAAAGGTTTTAGTCATGCCATCTGCAAATATAGCA
ACGGTGCGTTCCTTAGAACGTGGTTCCCAGGCTTGTACAATTGCAAGAGC
TGGGGACAATGTAGCTGTCAACCTACATGGAATAGATGGAAATCTCGTGT
TGGCTGGTGGAGTGTTATGTCACCCTGATTTTCCAGTTGCAATAGCAAAA
CATTTGGAGTTGAAGGTGCTTGTCTTGGATGGTGCAACCCCAATTTTAAT
CGGTTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGGCTGCAAGAG
TTGCAAAAATATCATCATTACTTGATTCAAAGACTGGGAAAGTCACAAAG
AAAGCACCCCGCTGCATTGTTGCTAAGCAGAGTGCAGTAGTTGAGGTGAT
ATTGCATGAACCGGTTTGCGCGGAAGAGTTTTCAAAATGCAAAGCCCTTG
GAAGAGTGTTTCTTAGAACATTAGGAAGAACGGTTGCTGTGGGCATCGTG
ACTCGAATAGTTTAG
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protein sequence of Tc09v2_p000530.3

>Tc09v2_p000530.3 ID=Tc09v2_p000530.3|Name=Tc09v2_p000530.3|organism=Theobroma cacao|type=polypeptide|length=705bp
MPRKVNYGVDYDDDDDYDDYDEYDYGYEVEENVEAPSEEETINHGVWRCS
ICTYDNDATLSACDICGVLRSPLVNNSTYDGKKTAPFKFDVPSPDDVVSN
GLRSSKLGSKANIFDSKSSKVSSSVVGKNEAAKVQLSTKRSGSSYDSTAK
DKHNRLDEIISSKNLEVDALSSSRNSDNSSASMPKGRIDIVDESIVVDNL
RSSVKRSSLMPKEIHNMVDDSSSSRNGGEAHSLTSNVKNMSLAAKSGHSK
DTSAGRANSYAQYKPEEWMLPEKAEDSLTQLNLAIVGHVDSGKSTLSGRL
LHLLGRISQKEMHKYEKESKLQGKGSFAYAWALDESAEERERGITMTVAV
AYFDSKRYHVVVLDSPGHKDFVPNMITGATQADAAILVVDASIGSFEAGM
DGAKGQTREHAQLIRSFGVDQIIVAVNKMDTVEYSKNRFDFLKSQLWTFL
RSCGFKDSSVSWIPLSVVENQNLVAAPSDVRLSWYHGPYLLDAIDSFQPP
TRDFSKPLLIPICDVIRSPSQGQVSACGKLEAGAVRSGSKVLVMPSANIA
TVRSLERGSQACTIARAGDNVAVNLHGIDGNLVLAGGVLCHPDFPVAIAK
HLELKVLVLDGATPILIGSQLEFHIHHAKEAARVAKISSLLDSKTGKVTK
KAPRCIVAKQSAVVEVILHEPVCAEEFSKCKALGRVFLRTLGRTVAVGIV
TRIV*
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