Tc08v2_t016580.3

Overview
NameTc08v2_t016580.3
Unique NameTc08v2_t016580.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length426
Properties
Property NameValue
NoteHypothetical protein
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC108663085, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663085
GenbankXM_018125663.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g016580Tc08v2_g016580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p016580.3Tc08v2_p016580.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto418523auto418523Theobroma cacaoexon
exon-auto418524auto418524Theobroma cacaoexon
exon-auto418525auto418525Theobroma cacaoexon
exon-auto418526auto418526Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto418527auto418527Theobroma cacaoCDS
CDS-auto418528auto418528Theobroma cacaoCDS
CDS-auto418529auto418529Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t016580.3 ID=Tc08v2_t016580.3|Name=Tc08v2_t016580.3|organism=Theobroma cacao|type=mRNA|length=426bp
ATGGCTAGCAAATACATAGCAAACTCGTACGTCTACCCATCAATGAGTCG
TCGAGATCTGAAAAACTCAATGGTGGAAGTGTACGAAGCTTTCAAGAAAG
ACGAGTGTGCGAGCGTCAAGATCTTAGGGGATCAAGGGGTTGAATTTTTC
ACAACATTAAAGGATCTCAAAGAGGGAATGACAAGTGAACAAATTGACGC
ATCCCTCAGCATACTATGTAAGCGAATGATAGGATCAAAGTCTAAGTTGT
ACAACACTCGTGCATGCGTGGTTGATACGATATTCTTCATGGGTTGCGAG
GTTATGTGGAGGGTGATAAGCCGACATACGGGAAAAAATGGAAGATGTCG
ATTTCTTTCTCATACTTTGCAATGTGGGTGGGCACTAGGTGGTTGCGAAG
ATCAACTTGGTCAAGTGGACAATTAA
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protein sequence of Tc08v2_p016580.3

>Tc08v2_p016580.3 ID=Tc08v2_p016580.3|Name=Tc08v2_p016580.3|organism=Theobroma cacao|type=polypeptide|length=142bp
MASKYIANSYVYPSMSRRDLKNSMVEVYEAFKKDECASVKILGDQGVEFF
TTLKDLKEGMTSEQIDASLSILCKRMIGSKSKLYNTRACVVDTIFFMGCE
VMWRVISRHTGKNGRCRFLSHTLQCGWALGGCEDQLGQVDN*
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