Tc08v2_t016580.2

Overview
NameTc08v2_t016580.2
Unique NameTc08v2_t016580.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length468
Properties
Property NameValue
NoteHypothetical protein
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC108663085, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663085
GenbankXM_018125662.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g016580Tc08v2_g016580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p016580.2Tc08v2_p016580.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto418514auto418514Theobroma cacaoexon
exon-auto418515auto418515Theobroma cacaoexon
exon-auto418516auto418516Theobroma cacaoexon
exon-auto418517auto418517Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto418518auto418518Theobroma cacaoCDS
CDS-auto418519auto418519Theobroma cacaoCDS
CDS-auto418520auto418520Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t016580.2 ID=Tc08v2_t016580.2|Name=Tc08v2_t016580.2|organism=Theobroma cacao|type=mRNA|length=468bp
ATGGCTAGCAAATACATAGCAAACTCGTACGTCTACCCATCAATGAGTCG
TCGAGATCTGAAAAACTCAATGGTGGAAGTGTACGAAGCTTTCAAGAAAG
ACGAGTGTGCGAGCGTCAAGATCTTAGGGGATCAAGGGGTTGAATTTTTC
ACAACATTAAAGGATCTCAAAGAGGGAATGACAAGTGAACAAATTGACGC
ATCCCTCAGCATACTATGTAAGCGAATGATAGGATCAAAGTCTAAGTTGT
ACAACACTCGTGCATGCGTGGTTGATACGATATTCTTCCATATCCAATTG
AAGATGGACGGTATACTATGGAAATTTCAGATGGGTTGCGAGGTTATGTG
GAGGGTGATAAGCCGACATACGGGAAAAAATGGAAGATGTCGATTTCTTT
CTCATACTTTGCAATGTGGGTGGGCACTAGGTGGTTGCGAAGATCAACTT
GGTCAAGTGGACAATTAA
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protein sequence of Tc08v2_p016580.2

>Tc08v2_p016580.2 ID=Tc08v2_p016580.2|Name=Tc08v2_p016580.2|organism=Theobroma cacao|type=polypeptide|length=156bp
MASKYIANSYVYPSMSRRDLKNSMVEVYEAFKKDECASVKILGDQGVEFF
TTLKDLKEGMTSEQIDASLSILCKRMIGSKSKLYNTRACVVDTIFFHIQL
KMDGILWKFQMGCEVMWRVISRHTGKNGRCRFLSHTLQCGWALGGCEDQL
GQVDN*
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