Tc08v2_t014710.3

Overview
NameTc08v2_t014710.3
Unique NameTc08v2_t014710.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length474
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 147 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2-17 kDa, transcript variant X1
NoteUbiquitin-conjugating enzyme E2 30
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592943
GenbankXM_018126294.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g014710Tc08v2_g014710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p014710.3Tc08v2_p014710.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto414895auto414895Theobroma cacaoexon
exon-auto414896auto414896Theobroma cacaoexon
exon-auto414897auto414897Theobroma cacaoexon
exon-auto414898auto414898Theobroma cacaoexon
exon-auto414899auto414899Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto414900auto414900Theobroma cacaoCDS
CDS-auto414901auto414901Theobroma cacaoCDS
CDS-auto414902auto414902Theobroma cacaoCDS
CDS-auto414903auto414903Theobroma cacaoCDS
CDS-auto414904auto414904Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t014710.3 ID=Tc08v2_t014710.3|Name=Tc08v2_t014710.3|organism=Theobroma cacao|type=mRNA|length=474bp
ATGTTTCAGATTTTAAACAAATCGTCAATGTCTTCTAAACGGATCACCAA
GGAGTTGAAAGATCTGCAGAAGGATCCTCCTGTTTCTTGCAGTGCAGGTC
CTATTGGAGATGACATGTTTCATTGGCAAGCAACGATTATGGGTCCAGCA
GATAGCCCTTATGCTGGCGGGGTGTTTTTGGTGTCAATTCACTTTCCTCC
TGATTATCCCTTCAAGCCACCGAAGGTGGCCTTCAAGACAAAAGTTTATC
ACCCAAACATCAACAGCAATGGTAGCATCTGTCTTGACATTTTGAAAGAG
CAGTGGAGTCCTGCCCTTACAGTCTCAAAGGTCTTATTGTCGATATGCTC
GTTGCTGACGGATCCTAACCCAGATGATCCTTTGGTACCAGAAATTGCAC
ATACATACAAGACTGATAGAGCAAAGTACGAGTCTACTGCTCATTCCTGG
ACCCAGAAATATGCCATGGGTTAA
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protein sequence of Tc08v2_p014710.3

>Tc08v2_p014710.3 ID=Tc08v2_p014710.3|Name=Tc08v2_p014710.3|organism=Theobroma cacao|type=polypeptide|length=158bp
MFQILNKSSMSSKRITKELKDLQKDPPVSCSAGPIGDDMFHWQATIMGPA
DSPYAGGVFLVSIHFPPDYPFKPPKVAFKTKVYHPNINSNGSICLDILKE
QWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHTYKTDRAKYESTAHSW
TQKYAMG*
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