Tc08v2_t014330.3

Overview
NameTc08v2_t014330.3
Unique NameTc08v2_t014330.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2820
Properties
Property NameValue
NoteNon-lysosomal glucosylceramidase
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productnon-lysosomal glucosylceramidase, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592889
GenbankXM_018126058.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g014330Tc08v2_g014330Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p014330.3Tc08v2_p014330.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto413998auto413998Theobroma cacaoexon
exon-auto413999auto413999Theobroma cacaoexon
exon-auto414000auto414000Theobroma cacaoexon
exon-auto414001auto414001Theobroma cacaoexon
exon-auto414002auto414002Theobroma cacaoexon
exon-auto414003auto414003Theobroma cacaoexon
exon-auto414004auto414004Theobroma cacaoexon
exon-auto414005auto414005Theobroma cacaoexon
exon-auto414006auto414006Theobroma cacaoexon
exon-auto414007auto414007Theobroma cacaoexon
exon-auto414008auto414008Theobroma cacaoexon
exon-auto414009auto414009Theobroma cacaoexon
exon-auto414010auto414010Theobroma cacaoexon
exon-auto414011auto414011Theobroma cacaoexon
exon-auto414012auto414012Theobroma cacaoexon
exon-auto414013auto414013Theobroma cacaoexon
exon-auto414014auto414014Theobroma cacaoexon
exon-auto414015auto414015Theobroma cacaoexon
exon-auto414016auto414016Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto414017auto414017Theobroma cacaoCDS
CDS-auto414018auto414018Theobroma cacaoCDS
CDS-auto414019auto414019Theobroma cacaoCDS
CDS-auto414020auto414020Theobroma cacaoCDS
CDS-auto414021auto414021Theobroma cacaoCDS
CDS-auto414022auto414022Theobroma cacaoCDS
CDS-auto414023auto414023Theobroma cacaoCDS
CDS-auto414024auto414024Theobroma cacaoCDS
CDS-auto414025auto414025Theobroma cacaoCDS
CDS-auto414026auto414026Theobroma cacaoCDS
CDS-auto414027auto414027Theobroma cacaoCDS
CDS-auto414028auto414028Theobroma cacaoCDS
CDS-auto414029auto414029Theobroma cacaoCDS
CDS-auto414030auto414030Theobroma cacaoCDS
CDS-auto414031auto414031Theobroma cacaoCDS
CDS-auto414032auto414032Theobroma cacaoCDS
CDS-auto414033auto414033Theobroma cacaoCDS
CDS-auto414034auto414034Theobroma cacaoCDS
CDS-auto414035auto414035Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t014330.3 ID=Tc08v2_t014330.3|Name=Tc08v2_t014330.3|organism=Theobroma cacao|type=mRNA|length=2820bp
ATGGAGTTTTTTCCCTTTTTTATCCTTTCTAAGCAGGCTGATTCGGGGAA
ACCTCCTTCCCTCACATGGCAACGGCAATTGAATAGCATTCGAAAACCCC
CTACTGCTTTTGGCCTAGGTTTCAATGAGATAATTCATATGGCACAAATA
GGTTTTCGGCTGTGGCGTTACACCAAAGAAGAAGAAGCAAAAGGAAGAGC
ATCTATATTTGATATTTTCAGAAAGCACCTTGTTACATCTGATCATGGCG
TTCCTTTAGGTGGTATAGGGGCAGGAAGCATTGGAAGAGGTTACAGAGGT
GAATTTCAACGCTTTAAACTATTTCCCAAAGTATGTGAAGAGGGTCCAAT
CTTGGCAAATCAGTTCTCTGCTATTGTATCACGTCCAAATGGAAACAAAT
GTTCAACTGTACTATGTGCAAGAAGTCCAGAGGTGCCAAAAGAAAGTACA
GGTCTGGGCATTGAATCTTGGGATTGGAACTTGAAAGGGGAGAAGTGTAC
ATACCATGCTTTGTTTCCAAGGTCATGGACTATTTATGAGGGTCAACCTG
ATCCAGAGCTTAGAATCAGTTGTTGTCAAATTTCACCTTTTATTCCTCAC
AATTACAAAGAGAGCAGTTTTCCTGTATCAGTGTTTACGTTCACGCTCTC
TAATACTGGAAGTACCTCTGCTGATGTCACCTTGCTTTTTACATGGACTA
ATTCGGTGGGAGGGAACTCTGGATTTTCTGGTGATCACTTCAACTTAAAG
ATGAAGACAGAAGATGGAGTTCGTGGAGTACTTCTACACCACAAAACAGC
CAATGGGAAACCTCCACTTACTTTTGCCATTGCAGCAAAGGAAACTAGTG
AAGTACATGTCTCAGAGTGCCCTTGCTTCTTGATATCTGGAAATTTTCAA
GGCATGAGTGCCAAAGATATGTGGCATGAAATTAAAAAGCATGGGTCATT
TGACAACCTTGATTATGAAGAATCTTCACCTTCAGAACCAGGATCATCCA
TTGGAGCAGCTGTTGCAGCCTCTGTGACTGTTCCTTCTGATTCTGTTCGT
AGAGTCACATTCTCACTTGCATGGGACTGTCCAGAAGTAAGATTTGATGA
CAAGACATACCACAAGCGCTATACGAAATATTATGGCACTTTAGGGGATG
CAGCAGCAAATATTGCACATGATTCTATTTTTGAGCATTCTAACTGGGAA
TCCCAGATAGAATCATGGCAAAGACCAATTCTTGAAGACAAAAGGCTTCC
AGACTGGTATCCTGTCATTCTCTTCAATGAGCTCTACTACCTTAATGCAG
GGGGGACAATATGGACAGATGGATCACCTCCAATGCAAAGTTTAGTATCC
ATCGGAAAGAAGAAGTTTTCTCTTGACAAGTCCAGATCACATTTGGATAA
TACAATTGACACTGCTAATCAAGATGGTATAGCTATTGACATCCTAGAGA
GGATGACATCTGTACTCGAGAAAGCACATATTCCTCTAATGTCAAATGCT
GCTTTTGGAACCCGTTTGCTCCAGGATGGAGAAGAAAACATTGGTCAGTT
CCTCTACCTTGAAGGGAGTGAGTACCTCATGTGGAACACTTATGATGTTC
ATTTCTACTCCTCCTTTGCACTACTCATGCTATTCCCAAAACTTGAACTG
AGCATCCAGAGAGACTTTGCAGCAGCAGTTATGATACATGATCCAAGCAA
GATGGAAATTATGAGTGATGGGAAATGGGTTCCAAGAAAGGTTCTTGGTG
CTGTTCCACATGATATTGGGCTTAATGACCCTTGGTTTGAAGTAAATGCT
TATAATCTATTTAATACAGATAATTGGAAAGACCTGAATTCTAAGTTTGT
TCTCCAAATCTATAGGGATATTGTTGCTACTGGAGACAAAAATTTTGCAC
AGGCTGTTTGGCCTTCAGTTTATACTGCAATGGCTTTTATGGAACAATTT
GATAGTGATGGAGATGGGATGATTGAGAATCAAGGTTTCCCAGATCAAAC
ATATGATGCATGGTCTGTTACTGGTGTGAGTGCTTATAGTGGGGGGCTCT
GGGTGGCAGCCCTCCAAGCTGCTTCATCTATTGCTTGCCAAGTAGGTGAT
GATGTGTCTGCTGCCTACTTTCATGTGAAGTATCAAAAGGCAAAATCTGT
ATATGGCACCTTGTGGAATGGCTCCTACTTCAACTATGACAACACATGGA
GTAGTTCCAGCAGATGTATTCTAGCTGATCAACTGGCTGGACAATGGTAT
GCTAGAGCAAGTGGTCTCATGCCAATTGCAGATGATGACAAAGTGAGAAG
TGCACTTCAAACGATATATGATTTCAATGTCTTAAAGGTGAAAGGAGGAA
CACGTGGTGCCGTAAATGGGATGCTTCCAGATGGAAGAGTTGATATGTCA
GCACTACAATCAAGGGAAGTTTGGGCTGGAGTTACATATGCTGTTGCTGC
TACTATGATTCAAGAGGGGATGGTCGAAACAGCATTTAAAACAGCAGCCG
GTGCGTATGAAGCTGCTTGGTCACAGCAAGGTCTCGGGTACTCTTTTCAG
ACCCCAGAAGCCTGGAACACAGATGAGCAGTTCAGATCCCTCTGTTACAT
GAGACCTTTAGCAGTATGGGCAATGCAATGGGCTTTGACAAAGCCAAAAC
TCTTCACAGAGGAGATGAAACATGGAGTGATTAATGACTTTTTATACCAT
AAGCAGCATCTAGGATATTCAAAAGTGGCTCACCTCTTAAAGCTGCCTAG
TAAGGAGGAAACCTCTAAAACCTTCCTACAGTCTGTCACTGAGTTCATTT
GCAGAAGAGTACCAATTTGA
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protein sequence of Tc08v2_p014330.3

>Tc08v2_p014330.3 ID=Tc08v2_p014330.3|Name=Tc08v2_p014330.3|organism=Theobroma cacao|type=polypeptide|length=940bp
MEFFPFFILSKQADSGKPPSLTWQRQLNSIRKPPTAFGLGFNEIIHMAQI
GFRLWRYTKEEEAKGRASIFDIFRKHLVTSDHGVPLGGIGAGSIGRGYRG
EFQRFKLFPKVCEEGPILANQFSAIVSRPNGNKCSTVLCARSPEVPKEST
GLGIESWDWNLKGEKCTYHALFPRSWTIYEGQPDPELRISCCQISPFIPH
NYKESSFPVSVFTFTLSNTGSTSADVTLLFTWTNSVGGNSGFSGDHFNLK
MKTEDGVRGVLLHHKTANGKPPLTFAIAAKETSEVHVSECPCFLISGNFQ
GMSAKDMWHEIKKHGSFDNLDYEESSPSEPGSSIGAAVAASVTVPSDSVR
RVTFSLAWDCPEVRFDDKTYHKRYTKYYGTLGDAAANIAHDSIFEHSNWE
SQIESWQRPILEDKRLPDWYPVILFNELYYLNAGGTIWTDGSPPMQSLVS
IGKKKFSLDKSRSHLDNTIDTANQDGIAIDILERMTSVLEKAHIPLMSNA
AFGTRLLQDGEENIGQFLYLEGSEYLMWNTYDVHFYSSFALLMLFPKLEL
SIQRDFAAAVMIHDPSKMEIMSDGKWVPRKVLGAVPHDIGLNDPWFEVNA
YNLFNTDNWKDLNSKFVLQIYRDIVATGDKNFAQAVWPSVYTAMAFMEQF
DSDGDGMIENQGFPDQTYDAWSVTGVSAYSGGLWVAALQAASSIACQVGD
DVSAAYFHVKYQKAKSVYGTLWNGSYFNYDNTWSSSSRCILADQLAGQWY
ARASGLMPIADDDKVRSALQTIYDFNVLKVKGGTRGAVNGMLPDGRVDMS
ALQSREVWAGVTYAVAATMIQEGMVETAFKTAAGAYEAAWSQQGLGYSFQ
TPEAWNTDEQFRSLCYMRPLAVWAMQWALTKPKLFTEEMKHGVINDFLYH
KQHLGYSKVAHLLKLPSKEETSKTFLQSVTEFICRRVPI*
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