Tc08v2_t013940.1

Overview
NameTc08v2_t013940.1
Unique NameTc08v2_t013940.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1131
Properties
Property NameValue
NoteThioredoxin family protein isoform 2
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productuncharacterized LOC18592849
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592849
GenbankXM_007019761.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g013940Tc08v2_g013940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p013940.1Tc08v2_p013940.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto413288auto413288Theobroma cacaoexon
exon-auto413289auto413289Theobroma cacaoexon
exon-auto413290auto413290Theobroma cacaoexon
exon-auto413291auto413291Theobroma cacaoexon
exon-auto413292auto413292Theobroma cacaoexon
exon-auto413293auto413293Theobroma cacaoexon
exon-auto413294auto413294Theobroma cacaoexon
exon-auto413295auto413295Theobroma cacaoexon
exon-auto413296auto413296Theobroma cacaoexon
exon-auto413297auto413297Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto413298auto413298Theobroma cacaoCDS
CDS-auto413299auto413299Theobroma cacaoCDS
CDS-auto413300auto413300Theobroma cacaoCDS
CDS-auto413301auto413301Theobroma cacaoCDS
CDS-auto413302auto413302Theobroma cacaoCDS
CDS-auto413303auto413303Theobroma cacaoCDS
CDS-auto413304auto413304Theobroma cacaoCDS
CDS-auto413305auto413305Theobroma cacaoCDS
CDS-auto413306auto413306Theobroma cacaoCDS
CDS-auto413307auto413307Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t013940.1 ID=Tc08v2_t013940.1|Name=Tc08v2_t013940.1|organism=Theobroma cacao|type=mRNA|length=1131bp
ATGACACGCTACTCTCTATCTTCCCTCTCTTCGTCCTTTTCTTTAAACCC
CATTAACAGATATTCCTCAAACCCAGACAGCAAGAACCCTCCATCTCCAA
CTGCTTCGCTTCCAGTTTCTTCGCTGCTATTCTCTTCTTCTTCCCAAGAG
TTCTTGAGAAACGTGAAATGGGTCTCACGCAAAAACAGATACTATCTCGC
AAAACCTGCTGACCAAGATATAGGCACAAGGGAACCCTCTCCACAAGTTT
CAGGAGAAAATGCTGCAGCTTCGAGTTCAACTGCTGATGGCAATGCATCC
ACTAGTTTCTTATCCATCCTTTGTCCCCTCCTCAGGTTATTCTCTGGAGG
AGATCCCTCCCAAGAACGGAATCATGCTCTAGAGGTTGCAACATCTTCCT
TATCCAGCTTAGCAAGATTTCCTTGGGGATCAAAATCACTATCAGGGAGC
TTAGAGAGCCAGGATGTAACGATTTCTGATCCTCCCATGCGTATGCAGCT
CTTTGAATTTGAGGCATGCCCTTTTTGCAGAAGGGTTCGAGAAGCATTGA
CAGAGTTGGATCTTTCTGTAGAGGTCTATCCTTGCCCTAAAGGTTCTATA
AGACATAGGGAAATGGTTAGAAGCTTTGGTGGAAAAGAGCAGTTTCCCTT
CCTCATTGACCCAAATACTGAAATATCAATGTATGAAAGTGGTGATATAG
TCAAATACCTATTCACGCAATATGGTAAAGGGAGAAACCCCTCGATGGGT
CTTTTAGAAAGGTATCTCTCACAAAATGTTACACTGCACAGCACATTGTT
CACGGGATGGATGCCAACAATTCTTAGAGCAGGCAGAGGAATGATGCTAT
GGGATAAGGCAAGACAAGACCCACCACCAAGAAAGCTGGAACTTTTCTCA
TCTGAGAATAATCCTTATTCACGAATTGTACGAGAGGCACTCTGTGAGCT
AGAACTTCCATACATCCTTCAAAATGTTGGAGAAGGTTCTGGACGGACAA
AACTACTCCTTGATGCATCTGGATCCAAAGAGATACCCTATATGATCGAT
CCAAACACGGGGACTCAAATTGGTGATTACAAGAAAATATTGACCTACTT
GTTCAAGACATATTCAGTAGCCACTGTATAG
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protein sequence of Tc08v2_p013940.1

>Tc08v2_p013940.1 ID=Tc08v2_p013940.1|Name=Tc08v2_p013940.1|organism=Theobroma cacao|type=polypeptide|length=377bp
MTRYSLSSLSSSFSLNPINRYSSNPDSKNPPSPTASLPVSSLLFSSSSQE
FLRNVKWVSRKNRYYLAKPADQDIGTREPSPQVSGENAAASSSTADGNAS
TSFLSILCPLLRLFSGGDPSQERNHALEVATSSLSSLARFPWGSKSLSGS
LESQDVTISDPPMRMQLFEFEACPFCRRVREALTELDLSVEVYPCPKGSI
RHREMVRSFGGKEQFPFLIDPNTEISMYESGDIVKYLFTQYGKGRNPSMG
LLERYLSQNVTLHSTLFTGWMPTILRAGRGMMLWDKARQDPPPRKLELFS
SENNPYSRIVREALCELELPYILQNVGEGSGRTKLLLDASGSKEIPYMID
PNTGTQIGDYKKILTYLFKTYSVATV*
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