Tc08v2_t013850.1

Overview
NameTc08v2_t013850.1
Unique NameTc08v2_t013850.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2271
Properties
Property NameValue
NoteCycloartenol synthase 2
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 50 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productcycloartenol synthase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592839
GenbankXM_007019740.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g013850Tc08v2_g013850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p013850.1Tc08v2_p013850.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto413168auto413168Theobroma cacaoexon
exon-auto413169auto413169Theobroma cacaoexon
exon-auto413170auto413170Theobroma cacaoexon
exon-auto413171auto413171Theobroma cacaoexon
exon-auto413172auto413172Theobroma cacaoexon
exon-auto413173auto413173Theobroma cacaoexon
exon-auto413174auto413174Theobroma cacaoexon
exon-auto413175auto413175Theobroma cacaoexon
exon-auto413176auto413176Theobroma cacaoexon
exon-auto413177auto413177Theobroma cacaoexon
exon-auto413178auto413178Theobroma cacaoexon
exon-auto413179auto413179Theobroma cacaoexon
exon-auto413180auto413180Theobroma cacaoexon
exon-auto413181auto413181Theobroma cacaoexon
exon-auto413182auto413182Theobroma cacaoexon
exon-auto413183auto413183Theobroma cacaoexon
exon-auto413184auto413184Theobroma cacaoexon
exon-auto413185auto413185Theobroma cacaoexon
exon-auto413186auto413186Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto413187auto413187Theobroma cacaoCDS
CDS-auto413188auto413188Theobroma cacaoCDS
CDS-auto413189auto413189Theobroma cacaoCDS
CDS-auto413190auto413190Theobroma cacaoCDS
CDS-auto413191auto413191Theobroma cacaoCDS
CDS-auto413192auto413192Theobroma cacaoCDS
CDS-auto413193auto413193Theobroma cacaoCDS
CDS-auto413194auto413194Theobroma cacaoCDS
CDS-auto413195auto413195Theobroma cacaoCDS
CDS-auto413196auto413196Theobroma cacaoCDS
CDS-auto413197auto413197Theobroma cacaoCDS
CDS-auto413198auto413198Theobroma cacaoCDS
CDS-auto413199auto413199Theobroma cacaoCDS
CDS-auto413200auto413200Theobroma cacaoCDS
CDS-auto413201auto413201Theobroma cacaoCDS
CDS-auto413202auto413202Theobroma cacaoCDS
CDS-auto413203auto413203Theobroma cacaoCDS
CDS-auto413204auto413204Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t013850.1 ID=Tc08v2_t013850.1|Name=Tc08v2_t013850.1|organism=Theobroma cacao|type=mRNA|length=2271bp
ATGTGGAGGCTGAAAATCGCGGAGGGAGGCAGTCCATGGCTGAGGACAGT
GAACAATCACGTCGGCAGACAGATTTGGGAGTTCGATCCCGACCTCGGAT
CTCCCGAAGAGATAATGGAGATTGACAAGGCTCGCCACAATTTCACTGAT
AATCGATTCCAGAGGAAGCACAGCTCAGATCTACTCATGCGCTTGCAGTT
TTCAAAGGAGAACCCAGTTCCAGTGGTTTTACCTCAAGTTAAAGTTGAGG
AAGCAGAAAATATTACTGAAGGGATGGTCACTAATACATTACGAAGAGCT
ATAAATTTTCATTCATCCCTCCAGGCCCATGATGGGCACTGGCCAGGTGA
TTATGGAGGTCCAATGTTTCTTATGCCTGGCTTGGTAATTTCTCTGTCTA
TCACTGGAGCACTGAATGCAGTCTTATCAGAAGAGCATAAGAAGGAGATG
TGCCGTTATCTCTATAATCATCAGAACGAAGATGGTGGCTGGGGCTTACA
CATTGAGGGCCCAAGCACGATGTTTGGTACCGTCTTGAGTTATGTTACTT
TAAGGTTGCTTAGTGAAGGAGCTAATGATGGGCAGGGCGCAATGGAGAGA
GGAAGAGATTGGATTTTGAGTCATGGTGGTGCCACTCAAATAACATCGTG
GGGAAAAATGTGGCTTTCAGTGCTTGGAGTCTTTGAATGGTCTGGCAATA
ATCCTTTGCCCCCTGAGATATGGCTTCTTCCTTATATGCTTCCATTCCAT
CCAGGAAGGATGTGGTGTCACTGCCGGATGGTGTATTTGCCTATGTCTTA
TTTATATGGAAAGAGGTTTGTTGGCCCAATCACACCAACAGTTTTGTCTT
TGAGGAAGGAGCTTTTTACTATCCCATACCATGAAATAGATTGGAATCAA
GCACGAAATCTATGTGCAAAGGAAGATTTGTACTACCCTCACCCAATGGT
GCAGGATATTCTTTGGGCATCACTAGACAAGGTTGTTGAACCTATCCTAA
TGCATTGGCCTGGAAAGAAGTTGAGAGAAAAGGCTCTCCAAACTGCAATA
GAGCACATACACTATGAAGACGAGAATACTCGTTACATCTGCATTGGGCC
CGTAAACAAGGTCTTAAACATGCTTTGCTGTTGGGTGGAAGACCCCAATT
CAGAGGCTTTCAAATTGCATCTTCCAAGGATTTATGATTATCTATGGCTT
GCTGAAGATGGCATGAAAATGCAGGGTTACAATGGAAGTCAACTATGGGA
CACTGCGTTTGCAGTTCAAGCAATTATTTCAACCAACCTCACTGAGGAAT
ATGGCCTAACTTTGAGGAAGGCAAACACGTATATTAGGAACTCACAGGTT
CGAGAAGATTGCCCGGGTGATCTTAATTTTTGGTACCGTCACATCTCCAA
AGGTGCTTGGCCCTTTTCAACTGCAGATCATGGATGGCCCATTTCAGATT
GCACAGCAGAGGGATTAAAAGCTGCTCTTTTATTATCAAAAATACCCTCA
GAAATTGTTGGAGAACCAGTAGAAGCAAAGTGCTTATATGATGCTGTAAA
TGTTATTCTTTCACTTCAGAATGCAGATGGTGGCTATGCAACATATGAGC
TTACTAGATCATACTGTTGGTTGGAGCTGATCAACCCTGCAGAAACATTT
GGTGATATTGTTATAGACTATCCTTATGTGGAATGTACCTCAGCTGCAAT
TCAAGCTTTGACATCTTTTAAAAATTCTCATCCTGGGCATCGCCAAGAGG
AAATAGACCAATGTATCCAGAAGGCAGCCAAGTTCATTGAAAGTATACAA
GCTTCAGATGGCTCATGGTATGGCTCATGGGGCGTTTGCTTCACCTATGG
TACATGGTTTGGAGTGAAAGGATTGGTGGCTGCTGGAAACAACTTCAATA
ACTGTTCTAGCATTCGCAAAGCCTGCAATTTTCTGCTATCCAAACAGCTT
CCCTCAGGTGGCTGGGGAGAAAGTTATCTGTCATGTCAAAACAAGGTTTA
CTCAAATATTGAGGGCAACAGGCCACATGTAGTAAATACTGGCTGGGCTA
TGTTGGCTTTAATGGCTGCTGGGCAGGCTGAGAGAGATCCAACACCACTG
CACAAAGGAGCTAGATGTTTGATAAATTCGCAGATGGAGAATGGGGATTT
TCCACAAGAGGAAATTATGGGAGTGTTCAACAAGAATTGTATGATCACAT
ATGCTGCATATCGAAACATTTTCCCCATTTGGGCATTGGGAGAATATCGT
ACTAATGTTTTGGGCATTTAG
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protein sequence of Tc08v2_p013850.1

>Tc08v2_p013850.1 ID=Tc08v2_p013850.1|Name=Tc08v2_p013850.1|organism=Theobroma cacao|type=polypeptide|length=757bp
MWRLKIAEGGSPWLRTVNNHVGRQIWEFDPDLGSPEEIMEIDKARHNFTD
NRFQRKHSSDLLMRLQFSKENPVPVVLPQVKVEEAENITEGMVTNTLRRA
INFHSSLQAHDGHWPGDYGGPMFLMPGLVISLSITGALNAVLSEEHKKEM
CRYLYNHQNEDGGWGLHIEGPSTMFGTVLSYVTLRLLSEGANDGQGAMER
GRDWILSHGGATQITSWGKMWLSVLGVFEWSGNNPLPPEIWLLPYMLPFH
PGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFTIPYHEIDWNQ
ARNLCAKEDLYYPHPMVQDILWASLDKVVEPILMHWPGKKLREKALQTAI
EHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIYDYLWL
AEDGMKMQGYNGSQLWDTAFAVQAIISTNLTEEYGLTLRKANTYIRNSQV
REDCPGDLNFWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKIPS
EIVGEPVEAKCLYDAVNVILSLQNADGGYATYELTRSYCWLELINPAETF
GDIVIDYPYVECTSAAIQALTSFKNSHPGHRQEEIDQCIQKAAKFIESIQ
ASDGSWYGSWGVCFTYGTWFGVKGLVAAGNNFNNCSSIRKACNFLLSKQL
PSGGWGESYLSCQNKVYSNIEGNRPHVVNTGWAMLALMAAGQAERDPTPL
HKGARCLINSQMENGDFPQEEIMGVFNKNCMITYAAYRNIFPIWALGEYR
TNVLGI*
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