Tc08v2_t013350.1

Overview
NameTc08v2_t013350.1
Unique NameTc08v2_t013350.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1032
Properties
Property NameValue
NoteProbable choline kinase 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productprobable choline kinase 1, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592708
GenbankXM_018125590.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g013350Tc08v2_g013350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p013350.1Tc08v2_p013350.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto412059auto412059Theobroma cacaoexon
exon-auto412060auto412060Theobroma cacaoexon
exon-auto412061auto412061Theobroma cacaoexon
exon-auto412062auto412062Theobroma cacaoexon
exon-auto412063auto412063Theobroma cacaoexon
exon-auto412064auto412064Theobroma cacaoexon
exon-auto412065auto412065Theobroma cacaoexon
exon-auto412066auto412066Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto412067auto412067Theobroma cacaoCDS
CDS-auto412068auto412068Theobroma cacaoCDS
CDS-auto412069auto412069Theobroma cacaoCDS
CDS-auto412070auto412070Theobroma cacaoCDS
CDS-auto412071auto412071Theobroma cacaoCDS
CDS-auto412072auto412072Theobroma cacaoCDS
CDS-auto412073auto412073Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t013350.1 ID=Tc08v2_t013350.1|Name=Tc08v2_t013350.1|organism=Theobroma cacao|type=mRNA|length=1032bp
ATGGCTATAAAGAAAAACGGGTTCATTCCAAGTTCTGCACCAGAAGAACT
GAAGAAAGTTTTGAAAGCAGTGGCATCCGAATGGGGAGATATGATAGAAG
ATATGGAAGAATTTCATGTGATTCCTTTGAAGGGGGCTATGACTAACGAG
GTTTTTCAGATAAACTGGCCAACAAAGCATGGTGATCTTCATCAGAAAGT
GTTGGTCCGGGTTTATGGTGAGGGTGTGGAAGTGTTCTTCGATAGGGATG
ATGAGATTAGGACCTTTGAGTGCATGTCAAAGCACGGTCAGGGACCTAGG
CTTCTTGGGCGGTTTGCAGATGGAAGGATTGAGGAGTTCATTCATGCCAG
GACACTCTCTGCTGCTGACCTCCGTGACCCTGAAATATCTGCTCTTGTAG
CAGCTAAATTGAGAGAGTTCCACAATCTTCATATGCCTGGTCCAAAAGAT
GTACTTCTCTGGGAGAGATTGAGGACATGGCTTAGTCAGGCAAAGAAATT
GTGTTCCCCAGAAGATGCAAAAGAATTTGGCTTGGACATTCTAGGAGAGG
AAATCAGCATGCTAGAGAAAGAGTTAACACAGGGTTCTCAAGATATTGGG
TTTTGTCACAATGATTTGCAATATGGTAACATAATGATGGATGAAGAGAC
AAGAGCAATTACCCTAATCGACTATGAGTATGCAAGTTACAATCCTGTTG
CTTATGATCTTGCAAATCACTTCTGTGAGATGGCAGCAAATTATCATTCT
GAGACACCCCATATTTTGGACTACAGCATATACCCTGATCTGGAGGAGCG
CCAAAGATTCATCAGTGCATATCTCACCCCTTCAGGTAATGAACCTGGTG
AAGCTGAAGTGGCGCAGCTACTTAATGATGCAGAGAAGTACACTCTTGCT
AATCATCTGTTTTGGGGCTTATGGGGAATTATCTCGGGTCATGTAAACAA
GATAGACTTTGACTACATGGAGTATGCAAGGCAGAGGTTTCAGCAGTACT
GGTTAAGAAAGCCCTTGCTCTTAGGTTCCTGA
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protein sequence of Tc08v2_p013350.1

>Tc08v2_p013350.1 ID=Tc08v2_p013350.1|Name=Tc08v2_p013350.1|organism=Theobroma cacao|type=polypeptide|length=344bp
MAIKKNGFIPSSAPEELKKVLKAVASEWGDMIEDMEEFHVIPLKGAMTNE
VFQINWPTKHGDLHQKVLVRVYGEGVEVFFDRDDEIRTFECMSKHGQGPR
LLGRFADGRIEEFIHARTLSAADLRDPEISALVAAKLREFHNLHMPGPKD
VLLWERLRTWLSQAKKLCSPEDAKEFGLDILGEEISMLEKELTQGSQDIG
FCHNDLQYGNIMMDEETRAITLIDYEYASYNPVAYDLANHFCEMAANYHS
ETPHILDYSIYPDLEERQRFISAYLTPSGNEPGEAEVAQLLNDAEKYTLA
NHLFWGLWGIISGHVNKIDFDYMEYARQRFQQYWLRKPLLLGS*
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