Tc08v2_t013280.1

Overview
NameTc08v2_t013280.1
Unique NameTc08v2_t013280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length504
Properties
Property NameValue
NoteHypoxanthine-guanine phosphoribosyltransferase isoform 2
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Producthypoxanthine-guanine phosphoribosyltransferase, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592742
GenbankXM_007019607.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g013280Tc08v2_g013280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p013280.1Tc08v2_p013280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto411928auto411928Theobroma cacaoexon
exon-auto411929auto411929Theobroma cacaoexon
exon-auto411930auto411930Theobroma cacaoexon
exon-auto411931auto411931Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto411932auto411932Theobroma cacaoCDS
CDS-auto411933auto411933Theobroma cacaoCDS
CDS-auto411934auto411934Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t013280.1 ID=Tc08v2_t013280.1|Name=Tc08v2_t013280.1|organism=Theobroma cacao|type=mRNA|length=504bp
ATGTCTCTAGACTCTCACATGGAGAAGGTTCTTTGGACCGAGGACCAGAT
TCAGGACCGAGTGGCCCAGATTGCCTCTCAAATAACCCACGATTTCAGGG
CAGCTCCCCACCCTCCTCTCATTGTGGGAGTTGCCACCGGCGCTTTCTTG
TTCTTAGCCGATCTTGTCAGGCGCATCCACCTCCCCATCTCGGTTGACTT
GGTTCGAGCTCAATCTTATGGCTTCGCTACTCTCTCTAATGGAGCTCCCA
CCATTTCCCTTGACTTGAAGCTTGACGTTAAGGGTAAACACGTCGTTTTG
GTTGAGGATATTGTAGATACAGGATGCACTTTATCCTATCTCATTGGACA
CTTGGAATCAAAAGGAGCATCCTCTGTATCTGTCTGCACTTTTCTTGATA
AACCAGCAAGAAGGAAGGTTGATATTGAGCTAGTTGGTGATGGAAAGTTC
TACAAGGGATTTGAGAAGCACCCCTGTACCCCAAGGGAGTCCAGGGAGAT
CTGA
back to top

protein sequence of Tc08v2_p013280.1

>Tc08v2_p013280.1 ID=Tc08v2_p013280.1|Name=Tc08v2_p013280.1|organism=Theobroma cacao|type=polypeptide|length=168bp
MSLDSHMEKVLWTEDQIQDRVAQIASQITHDFRAAPHPPLIVGVATGAFL
FLADLVRRIHLPISVDLVRAQSYGFATLSNGAPTISLDLKLDVKGKHVVL
VEDIVDTGCTLSYLIGHLESKGASSVSVCTFLDKPARRKVDIELVGDGKF
YKGFEKHPCTPRESREI*
back to top