Tc08v2_t012160.1

Overview
NameTc08v2_t012160.1
Unique NameTc08v2_t012160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1140
Properties
Property NameValue
NoteAlcohol dehydrogenase 1
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 77 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productalcohol dehydrogenase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592528
GenbankXM_007019317.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g012160Tc08v2_g012160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p012160.1Tc08v2_p012160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto409861auto409861Theobroma cacaoexon
exon-auto409862auto409862Theobroma cacaoexon
exon-auto409863auto409863Theobroma cacaoexon
exon-auto409864auto409864Theobroma cacaoexon
exon-auto409865auto409865Theobroma cacaoexon
exon-auto409866auto409866Theobroma cacaoexon
exon-auto409867auto409867Theobroma cacaoexon
exon-auto409868auto409868Theobroma cacaoexon
exon-auto409869auto409869Theobroma cacaoexon
exon-auto409870auto409870Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto409871auto409871Theobroma cacaoCDS
CDS-auto409872auto409872Theobroma cacaoCDS
CDS-auto409873auto409873Theobroma cacaoCDS
CDS-auto409874auto409874Theobroma cacaoCDS
CDS-auto409875auto409875Theobroma cacaoCDS
CDS-auto409876auto409876Theobroma cacaoCDS
CDS-auto409877auto409877Theobroma cacaoCDS
CDS-auto409878auto409878Theobroma cacaoCDS
CDS-auto409879auto409879Theobroma cacaoCDS
CDS-auto409880auto409880Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t012160.1 ID=Tc08v2_t012160.1|Name=Tc08v2_t012160.1|organism=Theobroma cacao|type=mRNA|length=1140bp
ATGTCGAGCACTGCCTCTCAGGTGATACGCTGCAAAGCTGCTGTGGCATG
GGAGCCCGGGAAACCACTGGTGATACAAGAAGTAGAGGTGGCACCACCGC
AGGCAAGTGAAGTTCGTTTGAAAATTCTTTTTACCTCTTTGTGCCATACT
GATGTCTACTTCTGGGAAGCCAAGGGTCAGAACCCATTATTTCCTAGGAT
TTATGGCCATGAAGCAGGCGGGATTGTGGAGAGTGTTGGTGAAGGTGTGA
CAGAACTCAAACCTGGTGACCATGTCCTGCCTGTGTTCACAGGGGAATGC
ATGGATTGTGCTCACTGCAAATCAGAAGAGAGCAACATGTGTGACTTGCT
CAGGGTTAACACTGACAGGGGTGTAATGCTTAACGATGAGAAAACAAGAT
TTTCAATCAATGGGAAGCCTATTTACCATTTTGTTGGGACTTCCACTTTC
AGTGAGTACACTGTGGTTCATGCTGGCTGTGTTGCCAAGATCAACCCCTT
GGCTTCTCTTGACAAAGTTTGTGTTCTCAGCTGTGGAATATCCACAGGAC
TGGGTGCTACTCTTAATGTTGCAAAACCTCCCAAGGGCTCAACGGTGGCT
GTCTTTGGATTGGGAGCCGTGGGACTTGCAGCTGCTGAAGGGGCCAGGAT
TGCTGGTGCTTCAAGGATTATTGGTGTTGATATTAACTCAAATAGATTTG
AAGGAGCAAAGAAATTTGGCGTGACACAGTTTGTGAACCCAAAAGACTAC
AAGAAGCCAGTTCAGGAGGTGATTGCTGAGATAACCGATGGTGGAGTGGA
CAGAAGCATTGAATGTACTGGAAATGTGGATGCTATGATCTCTGCATTTG
AATGTGTCCATGATGGCTGGGGTGTTGCTGTTCTTGTGGGGGTGCCACAC
AAAGATGCTGTGTTCAAGACTCACCCCATAAATTTGTTGAATGAGAGGAC
TCTCAAAGGTACCTTCTTCGGGAACTACAAACCCCGTTCCGATCTTCCGT
CAGTGGTGGAAAAGTACATGAGCAAGGAACTTGAACTAGAGAAATTCATA
ACACACTCAGTCCCATTCTCTGAGATCAACAAGGCTTTTGAATACATGCT
TAAAGGCGAAGGCCTTCGATGCATCATCCGTATGGAGTAG
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protein sequence of Tc08v2_p012160.1

>Tc08v2_p012160.1 ID=Tc08v2_p012160.1|Name=Tc08v2_p012160.1|organism=Theobroma cacao|type=polypeptide|length=380bp
MSSTASQVIRCKAAVAWEPGKPLVIQEVEVAPPQASEVRLKILFTSLCHT
DVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTELKPGDHVLPVFTGEC
MDCAHCKSEESNMCDLLRVNTDRGVMLNDEKTRFSINGKPIYHFVGTSTF
SEYTVVHAGCVAKINPLASLDKVCVLSCGISTGLGATLNVAKPPKGSTVA
VFGLGAVGLAAAEGARIAGASRIIGVDINSNRFEGAKKFGVTQFVNPKDY
KKPVQEVIAEITDGGVDRSIECTGNVDAMISAFECVHDGWGVAVLVGVPH
KDAVFKTHPINLLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELELEKFI
THSVPFSEINKAFEYMLKGEGLRCIIRME*
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