Tc08v2_t011720.1

Overview
NameTc08v2_t011720.1
Unique NameTc08v2_t011720.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1092
Properties
Property NameValue
NoteF-box protein SKP2A
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductF-box protein SKP2A, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592471
GenbankXM_007019227.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g011720Tc08v2_g011720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p011720.1Tc08v2_p011720.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto409168auto409168Theobroma cacaoexon
exon-auto409169auto409169Theobroma cacaoexon
exon-auto409170auto409170Theobroma cacaoexon
exon-auto409171auto409171Theobroma cacaoexon
exon-auto409172auto409172Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto409173auto409173Theobroma cacaoCDS
CDS-auto409174auto409174Theobroma cacaoCDS
CDS-auto409175auto409175Theobroma cacaoCDS
CDS-auto409176auto409176Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t011720.1 ID=Tc08v2_t011720.1|Name=Tc08v2_t011720.1|organism=Theobroma cacao|type=mRNA|length=1092bp
ATGATAGCTGAAGCGAAGGTGGGTAGTGAAGACTTGAACTTGTGTTTTGA
GAAGCTGATGATGGTTGCTGCTGGAAATAGTGGTGAGGGAGTTAAGATGG
AGGGTATGGTGATCACAGAGTGGAAAGATATTCCCATGGAGCTGCTGTTG
AGAATTGTTTCTCTAGTCGATGATCGGACTGCGATTGTTGCATCTGGTGT
TTGTAGTGGGTGGAGGGATGCCATTTGCTTGGGCCTCACCCAACTCTGTC
TCTCATGGTGCAGAAAGAACATGAACAATTTGGTTCTATCTCTTGCTCCT
AAATTCACCAAATTGCAAACTCTGATACTGCGCCAAGAGAACCCACAGCT
TGAAGACAATGCTGTTGAGACTATTGCAAATTTTTGTCACGATCTGCAGG
ACTTGGACCTCAGCAAAAGTTTCAAGCTTAGTGATCGCTCATTGTATGCA
TTGGCCCATGGTTGTCCTAACCTTACAAAACTTAACATTAGCGGCTGCCT
GTCTTTCAGTGATGAAGCTGTTGAATATTTGACTAATTTTTGTCGAAAAC
TGAAAATATTAAATCTTTGTGGATGTGTTAAGGCTGCAACTGACCGTGCA
TTGCAGGCTATTGGACGAAACTGCAACATGTTGCAATCTTTAAATCTGGG
ATGGTGTGAGAATGTTGGTGATCTAGGAGTGATGAGTCTTGCATATGGAT
GCCCTGATCTCAGATGCTTGGATTTGTGTGGATGTGTCCTCATAACAGAT
GATAGTGTGATTGCTTTGGCAAATGAGTGTCTCCATTTGAGGTCACTCGG
TCTCTACTACTGTCGTAACATCACAGACAGGGCAATGTACTCACTGGCTC
ACAGCCGAGTGAAGAACAAGCCTTCAATGTGGCAATCCATGAAGGGTAGA
TATGATGAAGAAGGTCTTAGAAGTCTCAATATAAGCCAGTGTACTGCACT
TACTCCTTCAGCTGTTCAGGCATTATGCGATACATTCCCTGCTCTTCACA
CCTGCTCTGGAAGGCATTCCCTTGTTATGAGTGGCTGCTGGAATTTAACG
TCTGTGCATTGTGTTTGTGCTGTCCAAGCACATTGCACATGA
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protein sequence of Tc08v2_p011720.1

>Tc08v2_p011720.1 ID=Tc08v2_p011720.1|Name=Tc08v2_p011720.1|organism=Theobroma cacao|type=polypeptide|length=364bp
MIAEAKVGSEDLNLCFEKLMMVAAGNSGEGVKMEGMVITEWKDIPMELLL
RIVSLVDDRTAIVASGVCSGWRDAICLGLTQLCLSWCRKNMNNLVLSLAP
KFTKLQTLILRQENPQLEDNAVETIANFCHDLQDLDLSKSFKLSDRSLYA
LAHGCPNLTKLNISGCLSFSDEAVEYLTNFCRKLKILNLCGCVKAATDRA
LQAIGRNCNMLQSLNLGWCENVGDLGVMSLAYGCPDLRCLDLCGCVLITD
DSVIALANECLHLRSLGLYYCRNITDRAMYSLAHSRVKNKPSMWQSMKGR
YDEEGLRSLNISQCTALTPSAVQALCDTFPALHTCSGRHSLVMSGCWNLT
SVHCVCAVQAHCT*
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