Tc08v2_t011670.1

Overview
NameTc08v2_t011670.1
Unique NameTc08v2_t011670.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1479
Properties
Property NameValue
Note2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Product2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592466
GenbankXM_018126329.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g011670Tc08v2_g011670Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p011670.1Tc08v2_p011670.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto408882auto408882Theobroma cacaoexon
exon-auto408883auto408883Theobroma cacaoexon
exon-auto408884auto408884Theobroma cacaoexon
exon-auto408885auto408885Theobroma cacaoexon
exon-auto408886auto408886Theobroma cacaoexon
exon-auto408887auto408887Theobroma cacaoexon
exon-auto408888auto408888Theobroma cacaoexon
exon-auto408889auto408889Theobroma cacaoexon
exon-auto408890auto408890Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto408891auto408891Theobroma cacaoCDS
CDS-auto408892auto408892Theobroma cacaoCDS
CDS-auto408893auto408893Theobroma cacaoCDS
CDS-auto408894auto408894Theobroma cacaoCDS
CDS-auto408895auto408895Theobroma cacaoCDS
CDS-auto408896auto408896Theobroma cacaoCDS
CDS-auto408897auto408897Theobroma cacaoCDS
CDS-auto408898auto408898Theobroma cacaoCDS
CDS-auto408899auto408899Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t011670.1 ID=Tc08v2_t011670.1|Name=Tc08v2_t011670.1|organism=Theobroma cacao|type=mRNA|length=1479bp
ATGGCGATTTGGTGGACAAGATCTTCAAGAACTATCGCCAACCACATCAG
GAAATGCATGAATAAAGGTTTCATGGGGGGCGCTGTCGTTAAGCAAAGTT
CTTGGAGCTCTACCGTGCAAAGTTGTAGTCTGTCGTCCTTGAGCAGTCAC
CGGCTTGTTCCTCAGAACTGTAGTTATCTGCATTCATTGCCATGCAACAG
GGCTACCCTTTTCTCTCTTCAGCGTTTCAAGTCCACCGTAGCTGAAGGGC
AGCTTGATTCGTTTTTCTCTAGCGATAGTGATGATGAACAGTCACTGGAC
TTTCCTGGAGGCAAAGTTACATATACTTCGGAAATGAATTTCATCTCAGA
ATCTTCACACGAGAGAATACCTTGCTATCGGGTCCTGGATGATGATGGAG
AGATAATAAATATGGACAGTGATTTGCAACAGGTAAGCAAGGAAGTTGCA
GTAAAAATGTACAGTGACATGGTGACTCTACAAATAATGGACAACATATT
CTATGAAGCACAAAGGCAGGGAAGAATATCCTTCTACATGACCTCAGCTG
GTGAAGAAGCAATTAACATAGCATCTGCAGCTGCTCTTGGTGAAGAAGAC
ATTATCTTGCCACAGTACCGTGAGCCCGGAGTTTTGTTATGGCGTGGCTT
CACACTGCAAGAATTCGCCAACCAGTGCTTTGGTAACAAGGCTGATCATG
GAAAAGGCCGGCAGATGCCAATTCATTATGGGTCTAAAGAGCACAATTTC
TTCACCATTTCATCCCCTATTGGGACACAACTTCCTCAAGCTGCTGGCAT
TGCTTATTCTCTTAAGATGGATAACAAAAAAGCATGTGCAGTATCATACA
TTGGAGATGGTGGCACCAGCGAAGGAGATTTTCATGCTGGTTTGAACTTT
GCAGCAGTTATGGAAGCCCCTGTCATATTTTTCTGTCGCAACAATGGCTG
GGCAATCAGTACACATGTATCAGAACAGTTTCGAAGTGATGGCATTGTTG
TAAAGGGTGAAGGGTATGGAATTAGAAGCATCAGGGTGGATGGTAATGAT
GCTCTTGCTGTTTACAGTGCAGTTTCTGCAGCTCGTGAAATGGCTATAAA
TGAACAGAGACCAATCCTTGTTGAGGCCCTTACATACAGAATAGGACACC
ATTCCACGTCTGATGATTCCACCAAGTATCGAGCGCTTGATGAAATTGAC
TACTGGAAATTGGCTAGAAACCCTGTCAACAGATTTAGATGTTGGGTTCA
AAGTAATGGTTGGTGGAGTGAACAACAAGAAACTGAGCTTCGAAAGAGTA
TCAGGAAACAGTTATTACAAGCAATTCAGGTGGCAGAGAAAACAGAGAAG
CCTCCACTTACAGAGTTATTCTCTGATGTCTATGATCATCTACCATCTAA
CCTTCAGGAACAAGAGAAACAACTCACAGAAACTATCAGCAGACATCCAA
AAGACTACCCTTCTGATGTTTCTGTCTAG
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protein sequence of Tc08v2_p011670.1

>Tc08v2_p011670.1 ID=Tc08v2_p011670.1|Name=Tc08v2_p011670.1|organism=Theobroma cacao|type=polypeptide|length=493bp
MAIWWTRSSRTIANHIRKCMNKGFMGGAVVKQSSWSSTVQSCSLSSLSSH
RLVPQNCSYLHSLPCNRATLFSLQRFKSTVAEGQLDSFFSSDSDDEQSLD
FPGGKVTYTSEMNFISESSHERIPCYRVLDDDGEIINMDSDLQQVSKEVA
VKMYSDMVTLQIMDNIFYEAQRQGRISFYMTSAGEEAINIASAAALGEED
IILPQYREPGVLLWRGFTLQEFANQCFGNKADHGKGRQMPIHYGSKEHNF
FTISSPIGTQLPQAAGIAYSLKMDNKKACAVSYIGDGGTSEGDFHAGLNF
AAVMEAPVIFFCRNNGWAISTHVSEQFRSDGIVVKGEGYGIRSIRVDGND
ALAVYSAVSAAREMAINEQRPILVEALTYRIGHHSTSDDSTKYRALDEID
YWKLARNPVNRFRCWVQSNGWWSEQQETELRKSIRKQLLQAIQVAEKTEK
PPLTELFSDVYDHLPSNLQEQEKQLTETISRHPKDYPSDVSV*
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