Tc08v2_t011660.1

Overview
NameTc08v2_t011660.1
Unique NameTc08v2_t011660.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1449
Properties
Property NameValue
Note2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Product2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592465
GenbankXM_018126354.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g011660Tc08v2_g011660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p011660.1Tc08v2_p011660.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto408861auto408861Theobroma cacaoexon
exon-auto408862auto408862Theobroma cacaoexon
exon-auto408863auto408863Theobroma cacaoexon
exon-auto408864auto408864Theobroma cacaoexon
exon-auto408865auto408865Theobroma cacaoexon
exon-auto408866auto408866Theobroma cacaoexon
exon-auto408867auto408867Theobroma cacaoexon
exon-auto408868auto408868Theobroma cacaoexon
exon-auto408869auto408869Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto408870auto408870Theobroma cacaoCDS
CDS-auto408871auto408871Theobroma cacaoCDS
CDS-auto408872auto408872Theobroma cacaoCDS
CDS-auto408873auto408873Theobroma cacaoCDS
CDS-auto408874auto408874Theobroma cacaoCDS
CDS-auto408875auto408875Theobroma cacaoCDS
CDS-auto408876auto408876Theobroma cacaoCDS
CDS-auto408877auto408877Theobroma cacaoCDS
CDS-auto408878auto408878Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t011660.1 ID=Tc08v2_t011660.1|Name=Tc08v2_t011660.1|organism=Theobroma cacao|type=mRNA|length=1449bp
ATGGCAAGTTGGTGGAGAAGATCGAGTGTAGTCGCTCATCATATCAGGGC
AAAGGTGGGTTTAAGGGGTACTGCTGCTCACATCAACCAAGCTTCTTCTT
GGAGCCATCCCTTCCAATCTGATTCCTCAACTTTAATTCTACCTTCATTT
CCATGCAATATTATAGCTACCCTTTTCTCGGTTAGGCGTCTCAAATCCAC
GGTCACTGGAAAACAACTGGATTCTCTACATGCTACTGATAATGATGATG
ATGATCAGGCATTGGATTTTCCAGGAGGAAAAGTTTCATATACTTCAGAA
ATGAAATTCATTTTAGGATGTTCTGATAAAAGAATACCTTGCTATCGAGT
TCTTGATGATGATGGAGAGCAAATTAGGGGTAGTGATTTTCAACAGGTCA
ACAAAGAATTGGCAGTAAAAATGTACAGTGACATGGTTACTCTGCAAATG
ATGGATACTTTGTTCCATGAAGCACAAAGGCAAGGAAGAATATCCTTCTA
TATAACATCATTCGGGGAAGAAGCAATTAACATAGCATCTGCTGCTGCAC
TTAGCAAAGATGATATTGTCTTGCCCCAGTACCGGGAACCTGGAGTTCTA
TTATGGCGTGGTTTCACGCTGCAAGAATTTGCCAACCAATGCTTTGGAAA
CAAGGCTGATGATGGGAAAGGTAGGCAGATGCCGATTCATTACGGGTCAA
GCAAGCATAACTTTGTCACTGTTTCATCCCCTATTGCAACTCAGCTTCCT
CAAGCTGCAGGAATGGCTTATTCTCTTAAGATCGATAAGAAGGATGCCTG
TGCTGTCGCATTTATTGGGGATGGTGGTACCAGTGAGGGTGATTTTCATG
CTGGTTTGAACTTTGCAGCAGTTCTGGAGGCCCCAGTCATTTTTGTTTGT
CGTAACAATGGCTGGGCCATAAGTACACCTATATCAGAACAATTTAGAAG
TGACGGTATAGTGGTTAAGGGCAAAGCTTATGGAATCCCAAGCATTCGGG
TGGATGGAACTGATGCACTTGCTGTTTATAGTGCCATTCATGCTGCTCGC
GATAAGGCAATAAATGTCCAAGGACCTGTCTTAGTTGAGACTCTTGCATA
TAGAGTGGGACACCATTCCACATCTGATGATTCGACCAAGTATCGTCCTC
TTGATGAAATCGAGTACTGGAAAACGGTAAGAAACCCTGTACATAAATTT
AGAAAATGGGTTGAAATTAGTGGCTGGTGGACTGAACGAGATGAAGCTGA
ACTTCGAAGAAGCATAAAGAAGCAGCTATTGCAAGCTATTCAAGTGGCAG
AGAAAACAGAGAAACCTCCACTTGCAGAGTTGTTCGCGGATGTCTACGAT
CTTCCACCATCTAACCTTCTTGAGCAAGAGAAACAACTCCGAGAAACTAT
CAATAAATATCCCCAAGATTTTCCCTCTGATGTTTCTCTATGTATCTGA
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protein sequence of Tc08v2_p011660.1

>Tc08v2_p011660.1 ID=Tc08v2_p011660.1|Name=Tc08v2_p011660.1|organism=Theobroma cacao|type=polypeptide|length=483bp
MASWWRRSSVVAHHIRAKVGLRGTAAHINQASSWSHPFQSDSSTLILPSF
PCNIIATLFSVRRLKSTVTGKQLDSLHATDNDDDDQALDFPGGKVSYTSE
MKFILGCSDKRIPCYRVLDDDGEQIRGSDFQQVNKELAVKMYSDMVTLQM
MDTLFHEAQRQGRISFYITSFGEEAINIASAAALSKDDIVLPQYREPGVL
LWRGFTLQEFANQCFGNKADDGKGRQMPIHYGSSKHNFVTVSSPIATQLP
QAAGMAYSLKIDKKDACAVAFIGDGGTSEGDFHAGLNFAAVLEAPVIFVC
RNNGWAISTPISEQFRSDGIVVKGKAYGIPSIRVDGTDALAVYSAIHAAR
DKAINVQGPVLVETLAYRVGHHSTSDDSTKYRPLDEIEYWKTVRNPVHKF
RKWVEISGWWTERDEAELRRSIKKQLLQAIQVAEKTEKPPLAELFADVYD
LPPSNLLEQEKQLRETINKYPQDFPSDVSLCI*
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