Tc08v2_t011330.1

Overview
NameTc08v2_t011330.1
Unique NameTc08v2_t011330.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1701
Properties
Property NameValue
NoteUDP-sugar pyrophosphorylase
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
ProductUDP-sugar pyrophosphorylase, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592423
GenbankXM_018126211.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g011330Tc08v2_g011330Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p011330.1Tc08v2_p011330.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto408454auto408454Theobroma cacaoexon
exon-auto408455auto408455Theobroma cacaoexon
exon-auto408456auto408456Theobroma cacaoexon
exon-auto408457auto408457Theobroma cacaoexon
exon-auto408458auto408458Theobroma cacaoexon
exon-auto408459auto408459Theobroma cacaoexon
exon-auto408460auto408460Theobroma cacaoexon
exon-auto408461auto408461Theobroma cacaoexon
exon-auto408462auto408462Theobroma cacaoexon
exon-auto408463auto408463Theobroma cacaoexon
exon-auto408464auto408464Theobroma cacaoexon
exon-auto408465auto408465Theobroma cacaoexon
exon-auto408466auto408466Theobroma cacaoexon
exon-auto408467auto408467Theobroma cacaoexon
exon-auto408468auto408468Theobroma cacaoexon
exon-auto408469auto408469Theobroma cacaoexon
exon-auto408470auto408470Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto408471auto408471Theobroma cacaoCDS
CDS-auto408472auto408472Theobroma cacaoCDS
CDS-auto408473auto408473Theobroma cacaoCDS
CDS-auto408474auto408474Theobroma cacaoCDS
CDS-auto408475auto408475Theobroma cacaoCDS
CDS-auto408476auto408476Theobroma cacaoCDS
CDS-auto408477auto408477Theobroma cacaoCDS
CDS-auto408478auto408478Theobroma cacaoCDS
CDS-auto408479auto408479Theobroma cacaoCDS
CDS-auto408480auto408480Theobroma cacaoCDS
CDS-auto408481auto408481Theobroma cacaoCDS
CDS-auto408482auto408482Theobroma cacaoCDS
CDS-auto408483auto408483Theobroma cacaoCDS
CDS-auto408484auto408484Theobroma cacaoCDS
CDS-auto408485auto408485Theobroma cacaoCDS
CDS-auto408486auto408486Theobroma cacaoCDS
CDS-auto408487auto408487Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t011330.1 ID=Tc08v2_t011330.1|Name=Tc08v2_t011330.1|organism=Theobroma cacao|type=mRNA|length=1701bp
ATGGCTTTGGCCGCGGCAGAGATTCTCTCCAACCTCAACATCAACGGGGG
AGATTGGCCTCCTAATCTTGTCAAGAATCTCCACCTCCTTTCTCCGGATC
AGATTGAATTGGCTAAGATGTTGTTAAAGATGGGACAGAGCCATTTGTTT
CAGCATTGGGCAGAGCCTGGCGCCGAGGACGACCAAAAGAAAGCTTTTTT
TGCTCAGGTGGCTAAGCTAAATTCGAGCTATCCAGGGGGTTTGGCATCGT
ATGTTAAAACCGCTAGGGAGCTCTTAGCGGACTCAAAAGCAGGGAAGAAT
CCTTATGATGGCTTCACACCTTCGGTTCCAACTGGAGAAATTCTTTCTTT
TGGTGATGAAAATTTCATCAAATTTGAGGAGGTAGGCATCAAAGAAGCCC
AAAATGCAGCATTTGTTCTTGTTGCAGGTGGACTTGGGGAACGTCTTGGA
TACAATGGAATTAAGGTTGCACTTCCAGCAGAGACCACAACTGGAACATG
TTTCTTACAACTCTACATTGAGACTATTCTGGCTCTTCAGGAAGCTAGTA
GGAGGCTCACAAAAGGCGCATGTCAAAAGGAGATTCCTTTTGTAATAATG
ACATCAGATGACACCCATGCCCGTACATTGGAGCTTTTAGAATCAAATTC
TTATTTTGGGATGAAACCTACTCAAGTTAAACTTCTTAAGCAGGAAAAAG
TTGCATGTGTAGATGATAATGATGCTAGGCTTGCTTTGGACCCTCATAAC
AAGTACAAAATTCAGACAAAACCTCATGGCCATGGTGATGTGCACTCGCT
TCTTTATTCTAGCGGCCTTTTGAACATATGGCGTGATGCTGGTTTGAGAT
GGGTTCTCTTTTTCCAAGACACAAATGGACTCCTCTTCAAGGCAATTCCA
GCATCACTGGGAGTCAGTGCTACTAAACAATACCATGTCAACTCTCTTGC
CGTTCAACGCAAAGCAAAAGAAGCTATTGGAGGAATTACCAGACTCACTC
ACAGTGATGGGAGATCGATGGTGATCAATGTTGAATACAATCAGCTTGAT
CCTCTGCTTAGAGCCACTGGACATCCTGATGGAGATGTTAATTGTGAGAC
AGGCTATTCTCCTTTCCCAGGAAATATAAACCAACTGATTTTGGAGCTTG
GTCCATACATTGAGGAGCTGTCAAAAACAGGGGGTGCTATTAAGGAATTT
GTTAACCCCAAGTATAAGGATGCTAGCAAAACATCATTTAAATCCTCAAC
TCGACTAGAGTGCATGATGCAAGACTATCCTAAAACATTGCCTCCAACAG
CAAGAGTTGGATTTACGGTGATGGATACATGGCTTGCTTATGCACCTGTG
AAAAACAACCCTGAGGATGCTGCTAAGGTACCAAAAGGGAACCCATATCA
CAGTGCAACTTCTGGAGAAATGGCCATATATCGTGCAAACAGTCTCATCC
TTAAAAAGGCTGGTGTCCAAGTGGTGGATGCAGTGCAACAGGTTTTCAAT
GGGCAAGAGGTGGATGTTTGGCCACGTGTTACGTGGAATCCTAAATGGGG
GCTAACTTTTTCTGATATCAAAAACAAAGTTAGTGGAAGTTGCTCCATTT
CTCAAAGGTCTACCATGGCCCTTAAGGGCCGCGATATCTTTCTTGAAGAT
CTATCCTTGGATGGAGCTCTTATTGTTGACTCTGTTGATGGTGCAGAGTA
A
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protein sequence of Tc08v2_p011330.1

>Tc08v2_p011330.1 ID=Tc08v2_p011330.1|Name=Tc08v2_p011330.1|organism=Theobroma cacao|type=polypeptide|length=567bp
MALAAAEILSNLNINGGDWPPNLVKNLHLLSPDQIELAKMLLKMGQSHLF
QHWAEPGAEDDQKKAFFAQVAKLNSSYPGGLASYVKTARELLADSKAGKN
PYDGFTPSVPTGEILSFGDENFIKFEEVGIKEAQNAAFVLVAGGLGERLG
YNGIKVALPAETTTGTCFLQLYIETILALQEASRRLTKGACQKEIPFVIM
TSDDTHARTLELLESNSYFGMKPTQVKLLKQEKVACVDDNDARLALDPHN
KYKIQTKPHGHGDVHSLLYSSGLLNIWRDAGLRWVLFFQDTNGLLFKAIP
ASLGVSATKQYHVNSLAVQRKAKEAIGGITRLTHSDGRSMVINVEYNQLD
PLLRATGHPDGDVNCETGYSPFPGNINQLILELGPYIEELSKTGGAIKEF
VNPKYKDASKTSFKSSTRLECMMQDYPKTLPPTARVGFTVMDTWLAYAPV
KNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILKKAGVQVVDAVQQVFN
GQEVDVWPRVTWNPKWGLTFSDIKNKVSGSCSISQRSTMALKGRDIFLED
LSLDGALIVDSVDGAE*
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