Tc08v2_t010990.2

Overview
NameTc08v2_t010990.2
Unique NameTc08v2_t010990.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length897
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductN-glycosylase/DNA lyase OGG1, transcript variant X2
NoteN-glycosylase/DNA lyase OGG1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592379
GenbankXM_007019078.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g010990Tc08v2_g010990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p010990.2Tc08v2_p010990.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto407488auto407488Theobroma cacaoexon
exon-auto407489auto407489Theobroma cacaoexon
exon-auto407490auto407490Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto407491auto407491Theobroma cacaoCDS
CDS-auto407492auto407492Theobroma cacaoCDS
CDS-auto407493auto407493Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t010990.2 ID=Tc08v2_t010990.2|Name=Tc08v2_t010990.2|organism=Theobroma cacao|type=mRNA|length=897bp
ATGAGACCTTTCCTAGCGATGAAAAGGCCAAGACCTTCACCACCACTCTC
CCCCACCTCCACCAAACCAAAACCACCGCCACCTCCTCAAACCCCACCAA
TCTCCGCCAAAAAGCCTAAACCTTACTCCCAATGGGTCCCACTAAACCTC
TCCCAATCCGAGCTCTCCCTTCCACTTACCTTCCCCACAGGCCAAACCTT
CCGCTGGAAACAAACAGGCCCGCTCCAATACACCGGCGCCATCGGACCGC
ACTTGCTCTCCCTCAAACACCTCCACAATGGCGACGTTTGTTACTTCATC
CACTCCACCCCTTCCGAATCCGCTGCCAAGCTAGCGCTTCTCGATTTTCT
CAACGTGGGCATTTCCTTGGCCAAGCTCTGGCAGGTTTTCTCGGAGAATG
ACTCGAGGTTTACTGAGCTGGCCAAGCATTTGAAGGGTGCGCGGGTTTTA
AGGCAGGACCCAGTTGAGTGCTTGGTCCAGTTCCTTTGTTCTTCTAATAA
TAATATTGGGAGGATTACTAAAATGGTGGATTTCGTTTCCTCTTTGGGGA
CTTATTTGGGCAGTGTTTGTGGGTTTGAGTTACATGAGTTCCCTTCATTG
GAACGTTTATCAGCTGTCTCTGAGGAAGAGCTTCGACGGGCTGGTTTTGG
TTACAGGGCCAAGTACATAACTGGCACGGTTGGTGTTTTGCAATCAAAAC
CAGATGGAGGTGCTCAATGGCTTCTTTCTCTTCGTAAATTGGATCTTGGA
GAGGCAATTGATGCTCTATGTACTTTACCTGGAGTTGGTCCCAAGGTGGC
AGCATGTATTGCTCTCTTCTCTCTCGATCAGCACCATGCCATTCCTGTTG
ATACACATGTGTGGCAGCAAGATTGCTACAAGGTACCTCCTTCCTGA
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protein sequence of Tc08v2_p010990.2

>Tc08v2_p010990.2 ID=Tc08v2_p010990.2|Name=Tc08v2_p010990.2|organism=Theobroma cacao|type=polypeptide|length=299bp
MRPFLAMKRPRPSPPLSPTSTKPKPPPPPQTPPISAKKPKPYSQWVPLNL
SQSELSLPLTFPTGQTFRWKQTGPLQYTGAIGPHLLSLKHLHNGDVCYFI
HSTPSESAAKLALLDFLNVGISLAKLWQVFSENDSRFTELAKHLKGARVL
RQDPVECLVQFLCSSNNNIGRITKMVDFVSSLGTYLGSVCGFELHEFPSL
ERLSAVSEEELRRAGFGYRAKYITGTVGVLQSKPDGGAQWLLSLRKLDLG
EAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWQQDCYKVPPS*
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