Tc08v2_t010840.2

Overview
NameTc08v2_t010840.2
Unique NameTc08v2_t010840.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1203
Properties
Property NameValue
NoteL-ascorbate peroxidase T isoform 2
Model evidenceSupporting evidence includes similarity to: 12 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable L-ascorbate peroxidase 6, chloroplastic, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592363
GenbankXM_007019049.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g010840Tc08v2_g010840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p010840.2Tc08v2_p010840.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto406914auto406914Theobroma cacaoexon
exon-auto406915auto406915Theobroma cacaoexon
exon-auto406916auto406916Theobroma cacaoexon
exon-auto406917auto406917Theobroma cacaoexon
exon-auto406918auto406918Theobroma cacaoexon
exon-auto406919auto406919Theobroma cacaoexon
exon-auto406920auto406920Theobroma cacaoexon
exon-auto406921auto406921Theobroma cacaoexon
exon-auto406922auto406922Theobroma cacaoexon
exon-auto406923auto406923Theobroma cacaoexon
exon-auto406924auto406924Theobroma cacaoexon
exon-auto406925auto406925Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto406926auto406926Theobroma cacaoCDS
CDS-auto406927auto406927Theobroma cacaoCDS
CDS-auto406928auto406928Theobroma cacaoCDS
CDS-auto406929auto406929Theobroma cacaoCDS
CDS-auto406930auto406930Theobroma cacaoCDS
CDS-auto406931auto406931Theobroma cacaoCDS
CDS-auto406932auto406932Theobroma cacaoCDS
CDS-auto406933auto406933Theobroma cacaoCDS
CDS-auto406934auto406934Theobroma cacaoCDS
CDS-auto406935auto406935Theobroma cacaoCDS
CDS-auto406936auto406936Theobroma cacaoCDS
CDS-auto406937auto406937Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t010840.2 ID=Tc08v2_t010840.2|Name=Tc08v2_t010840.2|organism=Theobroma cacao|type=mRNA|length=1203bp
ATGGCAGAGCGACTATCACAGCTGACACAAATAGTGAAAGTTCAGAGTTC
TTCACCTTCACAGTCTCAGTCATCATCACTGAAGCGGCCGATGGCTTCGT
CTCTAGGCACCGCCGCCTCTTCTCGAATCTTTGCTGCTTCCTCCTCCAAA
GCTCGACTGTATCTCCGTTCCTCCTATTCTTCTTCTCCCTCTCTCATTTC
TTTCTCTTCTTCTAAATCCCTCGCTCTCTGTCCTCGTTTCTGTCGCCACC
AGAGGACGTCGGCAGTTAATGTGTCGAGCAGCGGAAGATTCAGCACGGGA
GCAAGTCCGAAATGCGCTGCTTCGGATCCTGATCAGTTGAAGAGTGCTAG
GGAAGATATCAAGGAGCTTCTCAAATCTAAGTTTTGCCATCCTATTCTGG
TTCGTCTAGGATGGCACGATGCTGGTACCTACAACAAGAACATTGAGGAA
TGGCCTCAAAGGGGTGGAGCGAATGGAAGTCTTAGGTTTGAAGTTGAGCT
GAAACATGCAGCCAATGCTGGTCTTGTGAACGCGTTGAAGCTTATTCAGC
CTATCAAGGACAAGTACTCTGGTGTAACATATGCAGATTTGTTCCAGTTG
GCTAGTGCTACTGCTATTGAGGAGGCTGGGGGACCCAAAATTCCTATGAA
ATATGGTAGGGTGGATGTCTCTGGTCCTAATGAGTGTCCTGAAGAGGGCA
GGCTACCTGATGCTGGACCCCCTTCACCTGCTGATCATCTACGAGAGGTT
TTCTACCGAATGGGATTGAATGACAAGGAAATAGTTGCATTATCTGGTGC
ACACACACTTGGGAGGTCCAGACCAGAGCGTAGTGGTTGGGGCAAACCGG
AAACCAAGTATACGAAAGATGGGCCAGGAGCACCAGGAGGACATTCCTGG
ACTGTGCAATGGTTGAAGTTTGACAATTCATACTTCAAGGACATCAAAGC
GAAAAAGGATGAAGATCTGCTCGTGTTGCCAACTGATGCTGCCCTTTTTG
AAGATCCCCCTTTCAAGGTGTATGCTGAGAAATATGCTGAAGATCAGGAG
ACATTCTTCAAGGATTATGCAGAAGCCCATGCCAAACTTAGCAACCTTGG
GGCCAAATTTGATCCTCCAGAGGGTATTGTGTTAGATGCTGGTCCCACAC
AAGCTGCACCGGAAAAGTTTGTGGCTGCCAAGTACTCGACAGGAAAGGAT
TAA
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protein sequence of Tc08v2_p010840.2

>Tc08v2_p010840.2 ID=Tc08v2_p010840.2|Name=Tc08v2_p010840.2|organism=Theobroma cacao|type=polypeptide|length=401bp
MAERLSQLTQIVKVQSSSPSQSQSSSLKRPMASSLGTAASSRIFAASSSK
ARLYLRSSYSSSPSLISFSSSKSLALCPRFCRHQRTSAVNVSSSGRFSTG
ASPKCAASDPDQLKSAREDIKELLKSKFCHPILVRLGWHDAGTYNKNIEE
WPQRGGANGSLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQL
ASATAIEEAGGPKIPMKYGRVDVSGPNECPEEGRLPDAGPPSPADHLREV
FYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGHSW
TVQWLKFDNSYFKDIKAKKDEDLLVLPTDAALFEDPPFKVYAEKYAEDQE
TFFKDYAEAHAKLSNLGAKFDPPEGIVLDAGPTQAAPEKFVAAKYSTGKD
*
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