Tc08v2_t010840.1

Overview
NameTc08v2_t010840.1
Unique NameTc08v2_t010840.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1353
Properties
Property NameValue
NoteL-ascorbate peroxidase T, chloroplastic
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable L-ascorbate peroxidase 6, chloroplastic, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592363
GenbankXM_018126183.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g010840Tc08v2_g010840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p010840.1Tc08v2_p010840.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto406888auto406888Theobroma cacaoexon
exon-auto406889auto406889Theobroma cacaoexon
exon-auto406890auto406890Theobroma cacaoexon
exon-auto406891auto406891Theobroma cacaoexon
exon-auto406892auto406892Theobroma cacaoexon
exon-auto406893auto406893Theobroma cacaoexon
exon-auto406894auto406894Theobroma cacaoexon
exon-auto406895auto406895Theobroma cacaoexon
exon-auto406896auto406896Theobroma cacaoexon
exon-auto406897auto406897Theobroma cacaoexon
exon-auto406898auto406898Theobroma cacaoexon
exon-auto406899auto406899Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto406900auto406900Theobroma cacaoCDS
CDS-auto406901auto406901Theobroma cacaoCDS
CDS-auto406902auto406902Theobroma cacaoCDS
CDS-auto406903auto406903Theobroma cacaoCDS
CDS-auto406904auto406904Theobroma cacaoCDS
CDS-auto406905auto406905Theobroma cacaoCDS
CDS-auto406906auto406906Theobroma cacaoCDS
CDS-auto406907auto406907Theobroma cacaoCDS
CDS-auto406908auto406908Theobroma cacaoCDS
CDS-auto406909auto406909Theobroma cacaoCDS
CDS-auto406910auto406910Theobroma cacaoCDS
CDS-auto406911auto406911Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t010840.1 ID=Tc08v2_t010840.1|Name=Tc08v2_t010840.1|organism=Theobroma cacao|type=mRNA|length=1353bp
ATGGCAGAGCGACTATCACAGCTGACACAAATAGTGAAAGTTCAGAGTTC
TTCACCTTCACAGTCTCAGTCATCATCACTGAAGCGGCCGATGGCTTCGT
CTCTAGGCACCGCCGCCTCTTCTCGAATCTTTGCTGCTTCCTCCTCCAAA
GCTCGACTGTATCTCCGTTCCTCCTATTCTTCTTCTCCCTCTCTCATTTC
TTTCTCTTCTTCTAAATCCCTCGCTCTCTGTCCTCGTTTCTGTCGCCACC
AGAGGACGTCGGCAGTTAATGTGTCGAGCAGCGGAAGATTCAGCACGGGA
GCAAGTCCGAAATGCGCTGCTTCGGATCCTGATCAGTTGAAGAGTGCTAG
GGAAGATATCAAGGAGCTTCTCAAATCTAAGTTTTGCCATCCTATTCTGG
TTCGTCTAGGATGGCACGATGCTGGTACCTACAACAAGAACATTGAGGAA
TGGCCTCAAAGGGGTGGAGCGAATGGAAGTCTTAGGTTTGAAGTTGAGCT
GAAACATGCAGCCAATGCTGGTCTTGTGAACGCGTTGAAGCTTATTCAGC
CTATCAAGGACAAGTACTCTGGTGTAACATATGCAGATTTGTTCCAGTTG
GCTAGTGCTACTGCTATTGAGGAGGCTGGGGGACCCAAAATTCCTATGAA
ATATGGTAGGGTGGATGTCTCTGGTCCTAATGAGTGTCCTGAAGAGGGCA
GGCTACCTGATGCTGGACCCCCTTCACCTGCTGATCATCTACGAGAGGTT
TTCTACCGAATGGGATTGAATGACAAGGAAATAGTTGCATTATCTGGTGC
ACACACACTTGGGAGGTCCAGACCAGAGCGTAGTGGTTGGGGCAAACCGG
AAACCAAGTATACGAAAGATGGGCCAGGAGCACCAGGAGGACATTCCTGG
ACTGTGCAATGGTTGAAGTTTGACAATTCATACTTCAAGGACATCAAAGC
GAAAAAGGATGAAGATCTGCTCGTGTTGCCAACTGATGCTGCCCTTTTTG
AAGATCCCCCTTTCAAGGTGTATGCTGAGAAATATGCTGAAGATCAGGAG
ACATTCTTCAAGGATTATGCAGAAGCCCATGCCAAACTTAGCAACCTTGG
GGCCAAATTTGATCCTCCAGAGGGTATTGTGTTAGATGCTGGTCCCACAC
AAGCTGCACCGGAAAAGTTTGTGGCTGCCAAGTACTCGACAGGAAAGAGA
GAGCTGTCAGAAGCTATGAAGCAGAAGATTCGAGCAGAATATGAGGGACT
TGGTGGAAGCCCGGATAAGCCTCTACCAACCAACTATTTTCTAAACATCA
TGATTATTATTGGTATTTTGGCCTTGTTGACATCTCTTATGGGTAATTAT
TAA
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protein sequence of Tc08v2_p010840.1

>Tc08v2_p010840.1 ID=Tc08v2_p010840.1|Name=Tc08v2_p010840.1|organism=Theobroma cacao|type=polypeptide|length=451bp
MAERLSQLTQIVKVQSSSPSQSQSSSLKRPMASSLGTAASSRIFAASSSK
ARLYLRSSYSSSPSLISFSSSKSLALCPRFCRHQRTSAVNVSSSGRFSTG
ASPKCAASDPDQLKSAREDIKELLKSKFCHPILVRLGWHDAGTYNKNIEE
WPQRGGANGSLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQL
ASATAIEEAGGPKIPMKYGRVDVSGPNECPEEGRLPDAGPPSPADHLREV
FYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGHSW
TVQWLKFDNSYFKDIKAKKDEDLLVLPTDAALFEDPPFKVYAEKYAEDQE
TFFKDYAEAHAKLSNLGAKFDPPEGIVLDAGPTQAAPEKFVAAKYSTGKR
ELSEAMKQKIRAEYEGLGGSPDKPLPTNYFLNIMIIIGILALLTSLMGNY
*
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