Tc08v2_t010600.1

Overview
NameTc08v2_t010600.1
Unique NameTc08v2_t010600.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length831
Properties
Property NameValue
NotePhotosystem II 22 kDa protein, chloroplastic
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem II 22 kDa protein, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592339
GenbankXM_007019011.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g010600Tc08v2_g010600Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p010600.1Tc08v2_p010600.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto406419auto406419Theobroma cacaoexon
exon-auto406420auto406420Theobroma cacaoexon
exon-auto406421auto406421Theobroma cacaoexon
exon-auto406422auto406422Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto406423auto406423Theobroma cacaoCDS
CDS-auto406424auto406424Theobroma cacaoCDS
CDS-auto406425auto406425Theobroma cacaoCDS
CDS-auto406426auto406426Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t010600.1 ID=Tc08v2_t010600.1|Name=Tc08v2_t010600.1|organism=Theobroma cacao|type=mRNA|length=831bp
ATGGCTCAAACCATGCTGCTCATGTCTAGTACTAGTGTATCAACTAGCCA
TGTAGTGAACTTGAAGAGAGGACACCCTTTACTCCAATTCCAAGCTCAAG
GATTAAAGCCTAAACCCTTCTTTCATTTCTTATTGAACCCATTCTCTGAC
AGTGTTGCTACTTCATCTAGAGGTTTTACCACTTTTGCAGTCTTCAAACC
AAAGACCAAAGCAGCTCCCAAGAGGGTTGCAGCACCACCAAAGCTAAAGG
TTGAAGATGGTATCTTTGGCACCTCTGGAGGGATTGGTTTTACCAAGCAA
AATGAGCTCTTTGTTGGACGCGTTGCCATGCTTGGTTTTGCTGCATCCTT
GCTAGGTGAAGCGATAACAGGGAAAGGAATTCTAGCGCAGTTGAACCTGG
AGACTGGAATTCCCATTTATGAAGCTGAACCCCTTCTTCTCTTCTTCATT
CTTTTCACCCTCCTAGGAGCAATAGGAGCATTGGGAGACCGAGGCAGCTT
TGTCGATGACCCGCCTTCAGGCATTGAAGGAGCAGTTATCCCTCCTGGCA
GAGGCATCAGGGGTGCGTTGGGTCTCAAGGAAGGAGGTCCACTGTTTGGA
TTCACAAAGGCAAATGAGCTCTTTGTTGGTAGATTGGCTCAGCTGGGTAT
TGCTTTCTCATTGATAGGAGAAATTATAACAGGAAAGGGAGCTCTAGCCC
AACTAAACATTGAGACAGGAATCCCCATCAGCGATATTGAACCCCTCGTG
TTGTTCAACGTTGCCTTCTTCTTCTTCGCTGCTATAAACCCTGGGACTGG
TAAATTTGTCACAGATGAAGATGAAGAGTAG
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protein sequence of Tc08v2_p010600.1

>Tc08v2_p010600.1 ID=Tc08v2_p010600.1|Name=Tc08v2_p010600.1|organism=Theobroma cacao|type=polypeptide|length=277bp
MAQTMLLMSSTSVSTSHVVNLKRGHPLLQFQAQGLKPKPFFHFLLNPFSD
SVATSSRGFTTFAVFKPKTKAAPKRVAAPPKLKVEDGIFGTSGGIGFTKQ
NELFVGRVAMLGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFI
LFTLLGAIGALGDRGSFVDDPPSGIEGAVIPPGRGIRGALGLKEGGPLFG
FTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPISDIEPLV
LFNVAFFFFAAINPGTGKFVTDEDEE*
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