Tc08v2_t010120.1

Overview
NameTc08v2_t010120.1
Unique NameTc08v2_t010120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1398
Properties
Property NameValue
NoteAuxin transporter-like protein 3
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 57 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin transporter-like protein 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592286
GenbankXM_007018926.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g010120Tc08v2_g010120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p010120.1Tc08v2_p010120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto405459auto405459Theobroma cacaoexon
exon-auto405460auto405460Theobroma cacaoexon
exon-auto405461auto405461Theobroma cacaoexon
exon-auto405462auto405462Theobroma cacaoexon
exon-auto405463auto405463Theobroma cacaoexon
exon-auto405464auto405464Theobroma cacaoexon
exon-auto405465auto405465Theobroma cacaoexon
exon-auto405466auto405466Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto405467auto405467Theobroma cacaoCDS
CDS-auto405468auto405468Theobroma cacaoCDS
CDS-auto405469auto405469Theobroma cacaoCDS
CDS-auto405470auto405470Theobroma cacaoCDS
CDS-auto405471auto405471Theobroma cacaoCDS
CDS-auto405472auto405472Theobroma cacaoCDS
CDS-auto405473auto405473Theobroma cacaoCDS
CDS-auto405474auto405474Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t010120.1 ID=Tc08v2_t010120.1|Name=Tc08v2_t010120.1|organism=Theobroma cacao|type=mRNA|length=1398bp
ATGGCATCTGAGAAGGTTGAAACTATCGTAGCTGGAAACTATGTAGAAAT
GGAAAGAGAAGAAGGGGATTCCAGTTCTGCAAAGAGCAAATTTTCAAAGT
TGTTTTGGCACGGTGGCTCAGTCTATGATGCATGGTTCAGCTGTGCTTCT
AACCAGGTTGCTCAAGTGCTACTCACACTGCCATATTCATTCTCACAACT
GGGAATGTTATCTGGGATTCTATTTCAATTATTCTATGGCCTGATGGGAA
GCTGGACAGCATACCTTATAAGTGTACTTTATGTTGAGTACAGAACAAGG
AAGGAAAGAGAGAAGGTTGATTTCAGGAATCATGTAATTCAGTGGTTTGA
AGTTCTTGATGGGTTGTTGGGGAAACATTGGAGAAACGTAGGGCTTCTTT
TCAACTGCACTTTCCTTCTGTTTGGATCTGTGATTCAGTTAATTGCCTGT
GCAAGCAACATCTATTATATAAATGACAACCTTGACAAGAGAACTTGGAC
GTACATTTTTGGCGCCTGCTGTGCAACAACTGTGTTTATTCCTTCATTCC
ATAACTACAGAATTTGGTCATTTCTGGGCCTCATCATGACTTCTTACACT
GCATGGTACCTGACAATTGCTTCCCTTATCCATGGACAGATTGAGGGAGT
GAAGCACTCAGGGCCAACCAAGATGGTTCTCTACTTCACAGGAGCCACCA
ACATTCTCTACACCTTTGGTGGACATGCTGTCACAGTGGAGATTATGCAT
GCGATGTGGAAGCCACAAAAGTTCAAGATGATATACTTGATAGCTACACT
TTATGTGTTAACCCTAACTTTACCATCAGCTTCCGCTGTTTACTGGGCTT
TTGGTGACTTGCTTCTTACCCATGCCAATGCTTTATCATTGCTCCCAAGG
ACTGGATTCCGAGATACTGCTATTATTCTCATGCTCATTCATCAGTTTAT
TACATTTGGATTTGCCTGCACTCCTCTATACTTTGTGTGGGAGAAATTCA
TTGGGGTTCATGAAACAAAGAGTTTGTTCAAGAGGGCACTGGCTAGACTC
CCGGTGGTGATCCCAATTTGGTTCCTGGCAATTATCTTCCCTTTCTTTGG
CCCTATCAATTCCACTGTTGGATCTCTCCTTGTCAGCTTCACCGTTTACA
TAATTCCTTCATTAGCTCACATGATAACTTTTGCGCCTGCAGCCGCCCGA
GAGAATGCAGTGGAGAGACCACCATCATTCCTAGGAGGCTGGGCTGGCAT
GTACTCCATGAATGCCTTTGTAGTGGTATGGGTTTTGATTGTGGGATTCG
GGTTTGGTGGATGGGCAAGCATGCTCAATTTCATACAACAGATTGATACA
TTTGGCTTGTTCACCAAGTGCTATCAATGCCCCCCTCACAAGGCTTGA
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protein sequence of Tc08v2_p010120.1

>Tc08v2_p010120.1 ID=Tc08v2_p010120.1|Name=Tc08v2_p010120.1|organism=Theobroma cacao|type=polypeptide|length=466bp
MASEKVETIVAGNYVEMEREEGDSSSAKSKFSKLFWHGGSVYDAWFSCAS
NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLMGSWTAYLISVLYVEYRTR
KEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLLFNCTFLLFGSVIQLIAC
ASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSYT
AWYLTIASLIHGQIEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMH
AMWKPQKFKMIYLIATLYVLTLTLPSASAVYWAFGDLLLTHANALSLLPR
TGFRDTAIILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARL
PVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPSLAHMITFAPAAAR
ENAVERPPSFLGGWAGMYSMNAFVVVWVLIVGFGFGGWASMLNFIQQIDT
FGLFTKCYQCPPHKA*
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