Tc08v2_t009860.1

Overview
NameTc08v2_t009860.1
Unique NameTc08v2_t009860.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1770
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productmitogen-activated protein kinase kinase kinase 1
NoteMitogen-activated protein kinase kinase kinase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592256
GenbankXM_018126137.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g009860Tc08v2_g009860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p009860.1Tc08v2_p009860.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto404899auto404899Theobroma cacaoexon
exon-auto404900auto404900Theobroma cacaoexon
exon-auto404901auto404901Theobroma cacaoexon
exon-auto404902auto404902Theobroma cacaoexon
exon-auto404903auto404903Theobroma cacaoexon
exon-auto404904auto404904Theobroma cacaoexon
exon-auto404905auto404905Theobroma cacaoexon
exon-auto404906auto404906Theobroma cacaoexon
exon-auto404907auto404907Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto404908auto404908Theobroma cacaoCDS
CDS-auto404909auto404909Theobroma cacaoCDS
CDS-auto404910auto404910Theobroma cacaoCDS
CDS-auto404911auto404911Theobroma cacaoCDS
CDS-auto404912auto404912Theobroma cacaoCDS
CDS-auto404913auto404913Theobroma cacaoCDS
CDS-auto404914auto404914Theobroma cacaoCDS
CDS-auto404915auto404915Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t009860.1 ID=Tc08v2_t009860.1|Name=Tc08v2_t009860.1|organism=Theobroma cacao|type=mRNA|length=1770bp
ATGCATCACTTGCAACGATTCTTCAGTGATAGAAGCGGCATGGACTCGAA
GAGGAGCAGAAGAAAGCCGAGACTCGATCGCCGCAATGCATTGAAGCACG
TCGATTACGATGCAGCGTCTTTTTCTTCGTCTCTTGAAGATTCCTCTTCG
TCTTCTTCTCTAATCACGCGATCGCTCGATTTATCGGATAAAACCAGCTT
CCGTATCCAAGGAACCGACGGAGAGTTCGACCTGATTTGTCGGAGTTTGG
GCTTTAGTGGGCCTGAAGATTTTTCCATCCCAGCCGACGCTTGGGAGGCC
CGTAAAATCCGATCGTCATCGGATCTTCTACCCCGGTCCAGATTAAACCG
GTTGGATAGTCCGAACGAAGAGACAGCCAAGGAAAAAGACCGCACTGAAG
TGATAGTTGCTGAATTGTCTGACAGGGTTTTGGATACTGAGTTGACTCGG
GATGACTCGGTCGAGTTGAAGTTAAGCCAGTGCTACTTGTCCGATAGAAT
TGTGGTGGATGCTACTACTACAACCAAGTTAGAGTTAAACGCGTGTTGCG
TAGGTGTCAGCGGAGGAGGAAATAATGGAATTAAAGGGGCTAGGCCGCCG
GTTTTAAAGCCACCGCCGGCGGTGATGAAGCTACCGGTAATCGATAACGC
GTGCTCAACTTGGGATTTATTTAGGGATTTCGCCCCCGAAGACGATAGTG
GGTGTTTGGTTCCAGTTCATTCACTTTCCTCTTCCGATGAGGAAAATGAA
GAAGGTCAAGAAGAGGAGGATGGGGTTAATGTTGGAAATGATAAGCAGGA
GGCGAGTTTAATGAGAATAGGGGAGACAGCGGTTCTTTCAGAGTCATGTT
CGTTTACGACTTCGAATGACGATGATTCTTCCAGTTCTACAACGGAGCCT
ACGTCGAATATTTCACCTAATGGTAGGTTCAAAAGGAACATTACTTATTG
GGAGAAAGGTGAGCCTCTGGGGAATGGATCATTTGGATCGGTTTTCGAAG
GAATTTCTGATGATGGATTCTTCTTTGCTGTCAAGGAAGTTTCGCTGCTT
GATCAAGGAAGTCAGGGGAAGCAAAGTATTATCCAACTTGAACAGGAGAT
TGCTCTTTTAAGTCAGTTTGAACATGAAAATATAGTTCAGTATTATGGCA
CGGATAAGGATGAATCAAAATTATACATCTTTCTTGAGCTTGTAACCAAA
GGCTCCCTTTTAAGTCTATATTCAAAATATCATCTCAAAGATTCTCAAGT
CTCTGCATATACAAGACAGATTTTGCATGGATTGAAGTATCTTCATGACC
GAAATGTAGTTCATAGAGATATTAAGTGTGCAAACATTTTGGTGGATGCA
AGTGGATCAGTGAAACTTGCTGATTTTGGATTGGCAAAGGCAACGAAGTT
GAATGATGTTAAATCATGCAAAGGGACGGCATACTGGATGGCCCCTGAGG
TTGTCAACCGGAAGGGTCAAGGGTATGGACTTCCTGCTGATATATGGAGC
CTTGGTTGTACTGTGTTGGAGATGTTAACTGGTCTGTTTCCATACTCTCA
TTTGGAATGTATGCAAGCATTGTTTAGAATTGGCAGGGGTGAACCACCAC
CGGTTCCTGATTCTTTGTCAAAAGATGCACGAGAGTTCATCTTGCAATGC
GTACAAGTCAATCCAGATGCTCGGCCAACTGCTGCTAAGCTCTTACAGCA
TCCATTTGTGAAGAGGCCTCGACCAACGCACTCAGGCTCAGCATCTCCTC
ATCTTGGCCGACGGTTTTGA
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protein sequence of Tc08v2_p009860.1

>Tc08v2_p009860.1 ID=Tc08v2_p009860.1|Name=Tc08v2_p009860.1|organism=Theobroma cacao|type=polypeptide|length=590bp
MHHLQRFFSDRSGMDSKRSRRKPRLDRRNALKHVDYDAASFSSSLEDSSS
SSSLITRSLDLSDKTSFRIQGTDGEFDLICRSLGFSGPEDFSIPADAWEA
RKIRSSSDLLPRSRLNRLDSPNEETAKEKDRTEVIVAELSDRVLDTELTR
DDSVELKLSQCYLSDRIVVDATTTTKLELNACCVGVSGGGNNGIKGARPP
VLKPPPAVMKLPVIDNACSTWDLFRDFAPEDDSGCLVPVHSLSSSDEENE
EGQEEEDGVNVGNDKQEASLMRIGETAVLSESCSFTTSNDDDSSSSTTEP
TSNISPNGRFKRNITYWEKGEPLGNGSFGSVFEGISDDGFFFAVKEVSLL
DQGSQGKQSIIQLEQEIALLSQFEHENIVQYYGTDKDESKLYIFLELVTK
GSLLSLYSKYHLKDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDA
SGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNRKGQGYGLPADIWS
LGCTVLEMLTGLFPYSHLECMQALFRIGRGEPPPVPDSLSKDAREFILQC
VQVNPDARPTAAKLLQHPFVKRPRPTHSGSASPHLGRRF*
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