Tc08v2_t009660.2

Overview
NameTc08v2_t009660.2
Unique NameTc08v2_t009660.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1077
Properties
Property NameValue
NoteTranscription factor TGA7
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 85 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription factor TGA7, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592234
GenbankXM_018125849.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g009660Tc08v2_g009660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p009660.2Tc08v2_p009660.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto404478auto404478Theobroma cacaoexon
exon-auto404479auto404479Theobroma cacaoexon
exon-auto404480auto404480Theobroma cacaoexon
exon-auto404481auto404481Theobroma cacaoexon
exon-auto404482auto404482Theobroma cacaoexon
exon-auto404483auto404483Theobroma cacaoexon
exon-auto404484auto404484Theobroma cacaoexon
exon-auto404485auto404485Theobroma cacaoexon
exon-auto404486auto404486Theobroma cacaoexon
exon-auto404487auto404487Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto404488auto404488Theobroma cacaoCDS
CDS-auto404489auto404489Theobroma cacaoCDS
CDS-auto404490auto404490Theobroma cacaoCDS
CDS-auto404491auto404491Theobroma cacaoCDS
CDS-auto404492auto404492Theobroma cacaoCDS
CDS-auto404493auto404493Theobroma cacaoCDS
CDS-auto404494auto404494Theobroma cacaoCDS
CDS-auto404495auto404495Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t009660.2 ID=Tc08v2_t009660.2|Name=Tc08v2_t009660.2|organism=Theobroma cacao|type=mRNA|length=1077bp
ATGAGCTCTCCATCAACTGAACTTACCAAGAGGATGGCAATATATGAGCA
ATTCCACCAGATAAGCAGGTGGGGAGATGTCTTCAACAGTGACAATAGTC
CAAATACAGGGTCATCCACAATTGTGCAGGTGGATGTTAGGCTAGACAAC
AAGGCTGAATATATATCTTGTGAGCAAGTTGAACCTTCCAGAAGTGATCA
AGAAACAAACAAGCCCACTGATAAGATACAAAGGCGTCTAGCACAAAATC
GTGAAGCTGCTCGTAAAAGTCGTCTACGGAAAAAGGCCTATGTTCAACAA
TTAGAATCAAGTCGTTTGAAACTAGCTCAATTGGAGCAAGAACTTGAAAG
AGCTAGACAGCAGGGTATATACATAAGCAGTGCATCAGATACTGGTTATT
TTGGATTGTCTGGAACTGTAAACTCAGGGATCACTGCATTTGAGATGGAA
TATGGACACTGGGTTGAAGAGCAAAATAAACAGATATGTGAACTTAGAAG
TGCACTCCAGGCACATATTACTGATATAGAGCTCCGAATTCTGGTAGAAA
GTGGCTTGAACCACTATTGCAATTTGTTCCGCATGAAAGCAGATGCTGCA
AAGGCAGACATCTTCTATTTGATCTCAGGCATATGGAGAACTTCAGCTGA
GCGTTTCTTCCACTGGATTGGCGGGTTTCGCCCATCAGAGCTTTTAAATG
CTGTCATGTCACAAATTGAGCCCTTGACTGATCAACAACATTTGGAGGTC
TGTAACCTTCGACAATCTTCTCAGCAAGCTGAAGATGCTCTTTCCCAAGG
AATTGATAAACTCCAGCAGAATTTGGCCCAGAGTGTTGCAGCTGATTTGA
GTTCAGGAAACTACAGAGTTCAAATGGCTGCTGCAATTGATAAGTTGGAA
GCCTTAGAGGGCTTTGTAAACCAGGCTGATCACCTCCGCCAACAGACGTT
GCAGCAGATGGCTCGAATCTTAACAACTCGTCAAGCAGCTCGAGGTTTAC
TTGCCTTGGGGGAATACTTTCATCGCCTACGTGCTCTCAGTTCACTTTGG
GCTGCCCGTCCACGTGAACCTGCCTAG
back to top

protein sequence of Tc08v2_p009660.2

>Tc08v2_p009660.2 ID=Tc08v2_p009660.2|Name=Tc08v2_p009660.2|organism=Theobroma cacao|type=polypeptide|length=359bp
MSSPSTELTKRMAIYEQFHQISRWGDVFNSDNSPNTGSSTIVQVDVRLDN
KAEYISCEQVEPSRSDQETNKPTDKIQRRLAQNREAARKSRLRKKAYVQQ
LESSRLKLAQLEQELERARQQGIYISSASDTGYFGLSGTVNSGITAFEME
YGHWVEEQNKQICELRSALQAHITDIELRILVESGLNHYCNLFRMKADAA
KADIFYLISGIWRTSAERFFHWIGGFRPSELLNAVMSQIEPLTDQQHLEV
CNLRQSSQQAEDALSQGIDKLQQNLAQSVAADLSSGNYRVQMAAAIDKLE
ALEGFVNQADHLRQQTLQQMARILTTRQAARGLLALGEYFHRLRALSSLW
AARPREPA*
back to top