Tc08v2_t009660.1

Overview
NameTc08v2_t009660.1
Unique NameTc08v2_t009660.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1125
Properties
Property NameValue
NoteTranscription factor TGA7
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Producttranscription factor TGA7, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592234
GenbankXM_018125848.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g009660Tc08v2_g009660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p009660.1Tc08v2_p009660.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto404458auto404458Theobroma cacaoexon
exon-auto404459auto404459Theobroma cacaoexon
exon-auto404460auto404460Theobroma cacaoexon
exon-auto404461auto404461Theobroma cacaoexon
exon-auto404462auto404462Theobroma cacaoexon
exon-auto404463auto404463Theobroma cacaoexon
exon-auto404464auto404464Theobroma cacaoexon
exon-auto404465auto404465Theobroma cacaoexon
exon-auto404466auto404466Theobroma cacaoexon
exon-auto404467auto404467Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto404468auto404468Theobroma cacaoCDS
CDS-auto404469auto404469Theobroma cacaoCDS
CDS-auto404470auto404470Theobroma cacaoCDS
CDS-auto404471auto404471Theobroma cacaoCDS
CDS-auto404472auto404472Theobroma cacaoCDS
CDS-auto404473auto404473Theobroma cacaoCDS
CDS-auto404474auto404474Theobroma cacaoCDS
CDS-auto404475auto404475Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t009660.1 ID=Tc08v2_t009660.1|Name=Tc08v2_t009660.1|organism=Theobroma cacao|type=mRNA|length=1125bp
ATGAGCTCTCCATCAACTGAACTTACCAAGAGGATGGCAATATATGAGCA
ATTCCACCAGATAAGCAGGTGGGGAGATGTCTTCAACAGTGACAATAGTC
CAAATACAGGGTCATCCACAATTGTGCAGGTGGATGTTAGGCTAGACAAC
AAGGCTGAATATATATCTTGTGAGCAAGTTGAACCTTCCAGAAGTGATCA
AGAAACAAACAAGCCCACTGATAAGATACAAAGGCGTCTAGCACAAAATC
GTGAAGCTGCTCGTAAAAGTCGTCTACGGAAAAAGGCCTATGTTCAACAA
TTAGAATCAAGTCGTTTGAAACTAGCTCAATTGGAGCAAGAACTTGAAAG
AGCTAGACAGCAGGTTTCTAGATGTGGCATGCATAATCAATTAGGCAATG
CCTTAATGCAGGGTATATACATAAGCAGTGCATCAGATACTGGTTATTTT
GGATTGTCTGGAACTGTAAACTCAGGGATCACTGCATTTGAGATGGAATA
TGGACACTGGGTTGAAGAGCAAAATAAACAGATATGTGAACTTAGAAGTG
CACTCCAGGCACATATTACTGATATAGAGCTCCGAATTCTGGTAGAAAGT
GGCTTGAACCACTATTGCAATTTGTTCCGCATGAAAGCAGATGCTGCAAA
GGCAGACATCTTCTATTTGATCTCAGGCATATGGAGAACTTCAGCTGAGC
GTTTCTTCCACTGGATTGGCGGGTTTCGCCCATCAGAGCTTTTAAATGCT
GTCATGTCACAAATTGAGCCCTTGACTGATCAACAACATTTGGAGGTCTG
TAACCTTCGACAATCTTCTCAGCAAGCTGAAGATGCTCTTTCCCAAGGAA
TTGATAAACTCCAGCAGAATTTGGCCCAGAGTGTTGCAGCTGATTTGAGT
TCAGGAAACTACAGAGTTCAAATGGCTGCTGCAATTGATAAGTTGGAAGC
CTTAGAGGGCTTTGTAAACCAGGCTGATCACCTCCGCCAACAGACGTTGC
AGCAGATGGCTCGAATCTTAACAACTCGTCAAGCAGCTCGAGGTTTACTT
GCCTTGGGGGAATACTTTCATCGCCTACGTGCTCTCAGTTCACTTTGGGC
TGCCCGTCCACGTGAACCTGCCTAG
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protein sequence of Tc08v2_p009660.1

>Tc08v2_p009660.1 ID=Tc08v2_p009660.1|Name=Tc08v2_p009660.1|organism=Theobroma cacao|type=polypeptide|length=375bp
MSSPSTELTKRMAIYEQFHQISRWGDVFNSDNSPNTGSSTIVQVDVRLDN
KAEYISCEQVEPSRSDQETNKPTDKIQRRLAQNREAARKSRLRKKAYVQQ
LESSRLKLAQLEQELERARQQVSRCGMHNQLGNALMQGIYISSASDTGYF
GLSGTVNSGITAFEMEYGHWVEEQNKQICELRSALQAHITDIELRILVES
GLNHYCNLFRMKADAAKADIFYLISGIWRTSAERFFHWIGGFRPSELLNA
VMSQIEPLTDQQHLEVCNLRQSSQQAEDALSQGIDKLQQNLAQSVAADLS
SGNYRVQMAAAIDKLEALEGFVNQADHLRQQTLQQMARILTTRQAARGLL
ALGEYFHRLRALSSLWAARPREPA*
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