Tc08v2_t008780.1

Overview
NameTc08v2_t008780.1
Unique NameTc08v2_t008780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1620
Properties
Property NameValue
NotePhospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 31 ESTs, 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592127
GenbankXM_007018670.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g008780Tc08v2_g008780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p008780.1Tc08v2_p008780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto402397auto402397Theobroma cacaoexon
exon-auto402398auto402398Theobroma cacaoexon
exon-auto402399auto402399Theobroma cacaoexon
exon-auto402400auto402400Theobroma cacaoexon
exon-auto402401auto402401Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto402402auto402402Theobroma cacaoCDS
CDS-auto402403auto402403Theobroma cacaoCDS
CDS-auto402404auto402404Theobroma cacaoCDS
CDS-auto402405auto402405Theobroma cacaoCDS
CDS-auto402406auto402406Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t008780.1 ID=Tc08v2_t008780.1|Name=Tc08v2_t008780.1|organism=Theobroma cacao|type=mRNA|length=1620bp
ATGGCTCTCACCAACTCCTCCATTCTTCCAACCAAATCCCTCCTTCAATC
TCAACCATCGACGCCTTTCTCTAAAACCAAGCCATTCTCTGTTGTTCTAA
TCTCCGCCGTCCATTCATCTGACTCACCCAAGAACCCCATCGTCTCTGAT
AAATCTGCTAAGCAGCCAGCGACTGCTCCACTCGCTGCTACCAAATCAGC
TACTGCTGCTTCACCCACCGCTGCTCCTTCGCAAAATGCGGTTCCCGGGA
AATGGACCGTCGACAGCTGGAAGTCAAAGAAGGCGTTGCAGTTGCCGGAA
TATCCGGATCAGACGGAGCTTGAGTCGGTGCTCCGGACTCTCGAAGATTT
CCCTCCTATTGTCTTTGCTGGAGAGGCTAGGAGTCTCGAGGAAAAGCTCG
GGGAAGCCGCCTTGGGAAACGCTTTTCTGTTGCAAGGAGGAGATTGCGCG
GAGAGCTTTAAGGAGTTTAATGCTAATAACATTCGTGATACTTTCAGGAT
CCTTCTTCAGATGGGTGCCGTTTTGATGTTCGGTGGTCAAATGCCCGTTA
TCAAGGTGGGAAGAATGGCCGGGCAGTTTGCGAAGCCGAGGTCGCAGCCT
TTCGAGGAAAAGAATGGAGTGAAACTGCCGAGTTACAGAGGAGATAATAT
AAATGGGGATGCTTTCGACGCGAAGGCTAGGATTCCTGATCCCCAAAGAA
TGATTAGAGCTTACTGTCAAGCTGCAGCTACTTTGAATCTTCTGAGAGCT
TTTGCTACTGGAGGTTACGCTGCTATGCAAAGGGTTACGCAATGGAATTT
GGATTTCACCGAACACAGCGAGCAGGGAGATAGGTACCGCGAACTAGCTC
ATCGCGTTGATGAGGCCCTTGGATTCATGTCGGCAGCCGGACTGACAGTT
GATCATCCTATCATGACAACAACTGAGTTCTGGACATCACATGAGTGCTT
GCTCTTGCCATACGAACAGTCACTTACCAGGCTAGATTCTATTTCAGGCC
GTTACTATGACTGTTCTGCCCATTTCCTTTGGGTTGGGGAACGTACTAGA
CAGTTGGATGGTTCTCATGTTGAGTTTCTGAAAGGAGTTGCTAATCCTCT
TGGGATTAAGGTGAGCGATAAGATGGATCCAAATGAGCTAGTTAAGCTGA
TCGAAATTTTGAACCCTCAGAACAAACCTGGAAGGATAACAATTATCACA
AGAATGGGTGCCGAGAACATGAGAGTTAAGTTTCCCCATTTAATTAGGGC
AGTCCGCCGGGCTGGGCAAATTGTCACTTGGGTTAGTGATCCTATGCATG
GGAACACCATAAATTCTCCTGTCGGTCTCAAAACTCGTTCCTTCGATTCC
ATAAGGGCTGAAGTGAGAGCTTTCTTCGATGTGCATGAGCAAGAAGGAAG
TCATCCTGGAGGAGTTCATCTAGAGATGACCGGCCAGAATGTGACAGAAT
GCATTGGTGGATCGAAAAATGTTACATTTGATGACTTGGGTTCACGATAC
CACACCCACTGTGACCCTCGGCTCAATGCCTCACAATCTCTTGAGCTTGC
CTTCATCATAGCAGAGCGCCTTAGAAAGAGGAGGATCAGCTCACAGAAAT
CTCTGGCCTTAGGGCTGTAG
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protein sequence of Tc08v2_p008780.1

>Tc08v2_p008780.1 ID=Tc08v2_p008780.1|Name=Tc08v2_p008780.1|organism=Theobroma cacao|type=polypeptide|length=540bp
MALTNSSILPTKSLLQSQPSTPFSKTKPFSVVLISAVHSSDSPKNPIVSD
KSAKQPATAPLAATKSATAASPTAAPSQNAVPGKWTVDSWKSKKALQLPE
YPDQTELESVLRTLEDFPPIVFAGEARSLEEKLGEAALGNAFLLQGGDCA
ESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSQP
FEEKNGVKLPSYRGDNINGDAFDAKARIPDPQRMIRAYCQAAATLNLLRA
FATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTV
DHPIMTTTEFWTSHECLLLPYEQSLTRLDSISGRYYDCSAHFLWVGERTR
QLDGSHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIIT
RMGAENMRVKFPHLIRAVRRAGQIVTWVSDPMHGNTINSPVGLKTRSFDS
IRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSKNVTFDDLGSRY
HTHCDPRLNASQSLELAFIIAERLRKRRISSQKSLALGL*
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