Tc08v2_t008750.1

Overview
NameTc08v2_t008750.1
Unique NameTc08v2_t008750.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1017
Properties
Property NameValue
NoteSerine/threonine-protein kinase SAPK2
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 85 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productserine/threonine-protein kinase SAPK2, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592124
GenbankXM_007018663.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g008750Tc08v2_g008750Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p008750.1Tc08v2_p008750.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto402245auto402245Theobroma cacaoexon
exon-auto402246auto402246Theobroma cacaoexon
exon-auto402247auto402247Theobroma cacaoexon
exon-auto402248auto402248Theobroma cacaoexon
exon-auto402249auto402249Theobroma cacaoexon
exon-auto402250auto402250Theobroma cacaoexon
exon-auto402251auto402251Theobroma cacaoexon
exon-auto402252auto402252Theobroma cacaoexon
exon-auto402253auto402253Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto402254auto402254Theobroma cacaoCDS
CDS-auto402255auto402255Theobroma cacaoCDS
CDS-auto402256auto402256Theobroma cacaoCDS
CDS-auto402257auto402257Theobroma cacaoCDS
CDS-auto402258auto402258Theobroma cacaoCDS
CDS-auto402259auto402259Theobroma cacaoCDS
CDS-auto402260auto402260Theobroma cacaoCDS
CDS-auto402261auto402261Theobroma cacaoCDS
CDS-auto402262auto402262Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t008750.1 ID=Tc08v2_t008750.1|Name=Tc08v2_t008750.1|organism=Theobroma cacao|type=mRNA|length=1017bp
ATGGAACGTTATGAGATTGTGAAAGATATCGGGTCAGGGAATTTCGGAGT
GGCCAAGCTGGTCCGAGATAAATGGACAAAAGAGCTCTTGGCTGTTAAGT
TCATTGAGAGAGGGCAAAAGATTGATGAACATGTGCAAAGGGAAATCGTG
AACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTCCA
TCTTACACCTACTCATCTGGCCATAGTGATGGAGTATGCTGCAGGTGGAG
AACTCTTTGCGCGTATATGCAATGCTGGTAGATTTAGTGAGGATGAGGCT
AGGTTTTTCTTTCAGCAATTGATATCAGGAGTCAGTTACTGTCATTCCAT
GCAAATATGTCATCGAGATCTTAAGCTTGAAAACACTCTCCTGGATGGCA
GCACAGCACCACGCGTCAAAATATGTGATTTTGGATACTCAAAGTCATCT
GTTTTCCATTCACAACCAAAATCCACTGTAGGAACACCAGCTTACATTGC
TCCTGAGGTTCTATCCAAGAAAGAATATGATGGGAAGATTGCAGATGTTT
GGTCATGTGGGGTCACCTTATATGTCATGTTAGTTGGGGCATATCCCTTT
GAAGATCCTGATGATCCAAAAAACTTCAGAAAGACAATTGGGAGAATACT
CAGTGTCCACTACTCAATTCCTGATTATGTCCGAGTTTCTATGGAGTGCA
AACATCTTTTATCTCGGATATTTGCGGCAAATCCTGAAAAGAGAATAACT
ATACTGGAAATTAAAAGCCACCCTTGGTTCTTAAAGAACTTGCCCATCGA
ACTGATGGAAGGAGGAAGCTGGCAGAGCCATGATGTAAATAACCCTCCCC
AAAACTTGGAAGAAGTACAGTCTATAATACAAGAGGCCATGAAAACTTCA
GAAGTCCCCAAGGTTGGGGGACTTTTCATGGGAGGCAGCATGGATCTCGA
TGATTTAGATGCTGATGCAGATCTTGAAGATGTAGAGACAAGTGGTGATT
TTGTGTGCCCACTGTAA
back to top

protein sequence of Tc08v2_p008750.1

>Tc08v2_p008750.1 ID=Tc08v2_p008750.1|Name=Tc08v2_p008750.1|organism=Theobroma cacao|type=polypeptide|length=339bp
MERYEIVKDIGSGNFGVAKLVRDKWTKELLAVKFIERGQKIDEHVQREIV
NHRSLKHPNIVRFKEVHLTPTHLAIVMEYAAGGELFARICNAGRFSEDEA
RFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSS
VFHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPF
EDPDDPKNFRKTIGRILSVHYSIPDYVRVSMECKHLLSRIFAANPEKRIT
ILEIKSHPWFLKNLPIELMEGGSWQSHDVNNPPQNLEEVQSIIQEAMKTS
EVPKVGGLFMGGSMDLDDLDADADLEDVETSGDFVCPL*
back to top