Tc08v2_t008550.1

Overview
NameTc08v2_t008550.1
Unique NameTc08v2_t008550.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length873
Properties
Property NameValue
NoteRNA-binding family protein, putative
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product28 kDa ribonucleoprotein, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592100
GenbankXM_007018630.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g008550Tc08v2_g008550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p008550.1Tc08v2_p008550.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto401656auto401656Theobroma cacaoexon
exon-auto401657auto401657Theobroma cacaoexon
exon-auto401658auto401658Theobroma cacaoexon
exon-auto401659auto401659Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto401660auto401660Theobroma cacaoCDS
CDS-auto401661auto401661Theobroma cacaoCDS
CDS-auto401662auto401662Theobroma cacaoCDS
CDS-auto401663auto401663Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t008550.1 ID=Tc08v2_t008550.1|Name=Tc08v2_t008550.1|organism=Theobroma cacao|type=mRNA|length=873bp
ATGGCTCTGCTTCGCCTTCCCCACCAATCTTCTCTCGTCTCTCCCCAACC
TAAACTGATTTCTCAGTCCAACTTTACCTCAATCAAAAACGTCTCTTTAA
CCTGTCTACTCCCTCCATTTTCTCCTCTCACTAATACCCTTCCCTTGATA
GCTAGAAGATTTAGCGGCAATTTCATCCTCCATTTTTCTGCCACCACCCA
AGTCCCAGCTCTAAAAGTAAACGAACAAGAACAACAAGAAGAAGAGTTCT
CAAAAACTAGATTGATTGCCCAGAACGTGCCTTGGACTTGTACCACGGAA
GACATTCGTTCTTTGTTCGAAAAATACGGCACAGTCGTGGATGTTGAGCT
TTCTATGCATAACAAGACCAGAAATAGGGGTTTGGCATTTGTATCTATGG
CTTCGCCTGAAGAGGCACTTGCGGCTCTCAACAATCTCGAATCATATGAA
TTTGAGGGTCGTACTTTAAGGCTCAATTATGCTAAACCTAAGAAGAAGAG
ACCTGCTCCACCTGAGAAGCCGAAGCCGGTGCCAGCATTTAACTTGTTTG
TGGCAAATCTTTCATATGAAGCAAGAGCTAAACATCTTAAAGAGTTTTTT
AGTTCTGAGGGTGCTAATGTTGTTTCTGCTGAAGTTATATTTCACGAAAA
TCCAAGAAAGTCATCCGGGTATGGCTTTGTCTCATTCAAATCCAAGAAAG
AGGCTGATGCAGCGATGTCTGCTTTCCAAGGGAAGATGTTTATGGGAAGA
CCAATTCGGGTGGCACGTGGTAGACAATTTGTGAAAGTTCAATCAGATGA
CAGTTCACAGCCTGATGATAAATCAAATGAGCTGAACTCTGATTTGGAAC
AAGTGGACACTAAGTTAAATTGA
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protein sequence of Tc08v2_p008550.1

>Tc08v2_p008550.1 ID=Tc08v2_p008550.1|Name=Tc08v2_p008550.1|organism=Theobroma cacao|type=polypeptide|length=291bp
MALLRLPHQSSLVSPQPKLISQSNFTSIKNVSLTCLLPPFSPLTNTLPLI
ARRFSGNFILHFSATTQVPALKVNEQEQQEEEFSKTRLIAQNVPWTCTTE
DIRSLFEKYGTVVDVELSMHNKTRNRGLAFVSMASPEEALAALNNLESYE
FEGRTLRLNYAKPKKKRPAPPEKPKPVPAFNLFVANLSYEARAKHLKEFF
SSEGANVVSAEVIFHENPRKSSGYGFVSFKSKKEADAAMSAFQGKMFMGR
PIRVARGRQFVKVQSDDSSQPDDKSNELNSDLEQVDTKLN*
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