Tc08v2_t008220.2

Overview
NameTc08v2_t008220.2
Unique NameTc08v2_t008220.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3531
Properties
Property NameValue
NoteTetratricopeptide repeat protein SKI3
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Producttetratricopeptide repeat protein SKI3, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592062
GenbankXM_018126039.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g008220Tc08v2_g008220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p008220.2Tc08v2_p008220.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto400851auto400851Theobroma cacaoexon
exon-auto400852auto400852Theobroma cacaoexon
exon-auto400853auto400853Theobroma cacaoexon
exon-auto400854auto400854Theobroma cacaoexon
exon-auto400855auto400855Theobroma cacaoexon
exon-auto400856auto400856Theobroma cacaoexon
exon-auto400857auto400857Theobroma cacaoexon
exon-auto400858auto400858Theobroma cacaoexon
exon-auto400859auto400859Theobroma cacaoexon
exon-auto400860auto400860Theobroma cacaoexon
exon-auto400861auto400861Theobroma cacaoexon
exon-auto400862auto400862Theobroma cacaoexon
exon-auto400863auto400863Theobroma cacaoexon
exon-auto400864auto400864Theobroma cacaoexon
exon-auto400865auto400865Theobroma cacaoexon
exon-auto400866auto400866Theobroma cacaoexon
exon-auto400867auto400867Theobroma cacaoexon
exon-auto400868auto400868Theobroma cacaoexon
exon-auto400869auto400869Theobroma cacaoexon
exon-auto400870auto400870Theobroma cacaoexon
exon-auto400871auto400871Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto400872auto400872Theobroma cacaoCDS
CDS-auto400873auto400873Theobroma cacaoCDS
CDS-auto400874auto400874Theobroma cacaoCDS
CDS-auto400875auto400875Theobroma cacaoCDS
CDS-auto400876auto400876Theobroma cacaoCDS
CDS-auto400877auto400877Theobroma cacaoCDS
CDS-auto400878auto400878Theobroma cacaoCDS
CDS-auto400879auto400879Theobroma cacaoCDS
CDS-auto400880auto400880Theobroma cacaoCDS
CDS-auto400881auto400881Theobroma cacaoCDS
CDS-auto400882auto400882Theobroma cacaoCDS
CDS-auto400883auto400883Theobroma cacaoCDS
CDS-auto400884auto400884Theobroma cacaoCDS
CDS-auto400885auto400885Theobroma cacaoCDS
CDS-auto400886auto400886Theobroma cacaoCDS
CDS-auto400887auto400887Theobroma cacaoCDS
CDS-auto400888auto400888Theobroma cacaoCDS
CDS-auto400889auto400889Theobroma cacaoCDS
CDS-auto400890auto400890Theobroma cacaoCDS
CDS-auto400891auto400891Theobroma cacaoCDS
CDS-auto400892auto400892Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t008220.2 ID=Tc08v2_t008220.2|Name=Tc08v2_t008220.2|organism=Theobroma cacao|type=mRNA|length=3531bp
ATGGATGATTTTCAGGAGGAAGAAGAAAGAAGGCGGCTGGAGGAGTTGGT
GGAAAGCAATCCAGATGACCCTTCCCTTCATTTTCAACTTGGAGCATACT
TGTGGGAGACAGGCATAGGGAAGGAGAAAGCGGCAGAGCATTGGGTGATT
TCCGCAAAACAAAACCCTAACAATGCGGCAGCCTTCAGGTACTTGGGCCA
TTACTACGCCACTGTTTCGGCTGATGTCCAGAGAGCCATCAAGTGTTACC
AGAGAGCTCTATCCCTGCATCCTGATGATTCCGATGCTGGGGAAGCTTTG
TGTGATTTGTTGGACCGACAAGGAAAGGAGACCTTGGAGCTCGCAGTTTG
CAAAGATGCTTCTCACAACTCTCCCAGGGCTTTCTGGGCTTTCCGCCGAT
TGGGTTTTCTCCAGGTGCATCAAAAGAAATGGTCTGAAGCTGTAGAAAGT
CTTCAACATGCCATTCGAGGTTATCCTACCTCTCCTGATTTGTGGGAAGC
GCTTGGTCTTGCTTACCACCGTCTTGGCATGTTTACTGCCGCTATTAAGT
CCTATGGGCGTGCGGTTGAATTGGAAGATACAAGAATCTTTGCACTGGTT
GAATGTGGAAACGTCTTTTCGATGCTTGGTTCATTTAGAAAGGGAATTGA
GCAATTTCAGCAAGCACTGAAGATCTCGCCACAAAATCTGTCTGCACTCT
ATGGACTTGCTTCTGGGCTGCTTGGTCTATCAAAAGAATGTATAAACTCA
GGAGCATTTAGTTGGGGAGCTTCATTGTTGGAGGATGCATGTACAGTAGC
AGAAGTAAGCATCCAATTAGCTGGAAATTCATCATGTACTTGGAAGTTGC
ATGGTGATATTCAGCTTACATATGCACAAAGTTATCCATGGATGGAGGAG
AGCCAGAGTTTAGAATATAATGTGGAAACTTTCAACGAGTCCATATATTC
GTGGAAGAATACTTGTTCTTTGGCTGCTATGTCTGCTAGAAACTCTTATC
AACGTGCTTTGCACTTAGCCCCATGGCAGGCTAACATCTATATTGACATT
GCAATTTGTTCCGATCTTATCTCTTCGTTCAACATGGATTGTACACATGA
TCGTTGTACTTGGCAACTATCAGAGAAGATGACATTTGGGGCTTTAGTAC
TGGAGGGTGACAATTATGAGTTCTGGGTGGCTTTGGGCTGTTTGTCTCAC
TGTAATGCATTGAAACAGCATGCTTTAATTCGGGGACTGCAATTGGATGT
GTCTTTAGCTAATGCTTGGGCATATCTTGGAAAGCTTTATAGAGAAGAGA
ATGAGAAGGAATTGGCTAGGAAAGCATTTGACTGTTCTAGAGGTATAGAT
CCATCATTGGCGTTACCATGGGCGGGCATGTCAGCTGATACTCATACTGG
GGAGTCAACACCAGATGATGCTTTTGAGAGCTGCCTACGTGCCGTGCAGA
TATTACCTGTTGCAGAGTTCCAAATTGGTCTTGCTAAGCTTGCTTTGCTT
TCAGGGAACCTTTCATCTTCACAGGTATTTGGAGCTATCCAGCAGGCAGT
GCAACGCGCACCTCATTATCACGAATCCCATAATTTAAATGGGCTAGCGT
GTGAGGCACGTTTCCATTTTCAATCTGCCATTGCTTCTTATAGACTAGCA
CGTTATGCTACCACCACCATTTCTTCAGGCACTGTCTTGAAATCTCATTT
GAAAGACATATCAACTAATTTGGCCAGATCACTTTGTAAGGCAGGGAGTG
CCATAGATGCCGTGCAAGAATGCGAAGACTTGAAGAGAAAAGGTATGCTT
GATGCAGAAGGTTTGCAAGTGTATGCTTTCTCCTTATGGCAACTTGGTGA
GCATGAGGTGGCCCTCTCTGTGACTAGAACCCTAGCTGCCAGTGTTTCTA
CCATGGATAGGACATCTGCAGCTGTGTCTGTTAGTTTCATTTGTAGATTG
CTGTACTACATTTCTGGACAGGATTCAGCAATTGTTAGCATTCTGAAAAT
GCCAAAGGAACTATTTCAGAGTTCAAAAATAAGCTTTATTGTCTCTGCCA
TTAATGCTCTGGATCAGAATAATAGCCTGGAATCAATTGTTTCTAGCAGT
CGTTACTTTCTTGCATCACATGGGGAGATCACTGGAATGCACTATTTAAT
CGCACTTAGTAAACTAATTAAACATGGGGCAGAACACCACCTTGGATTTC
AGAGCGGAGTCAGTCATCTTAGAAAAGCTCTTCACATGTACCCTAACAGT
AATTTACTAAGGAACCTACTTGGTTATCTTTTGCTGGCCAGTGAAGAATG
GGGAAATATTCATGTTTCAAGTAGATGCTCCGTTGTCAATGCTTCTGAAT
CTAAGAATAATGAAGGCTTAAAATTGGCCTGGGAGATCTTCAGTGCTGGG
ACAGTTGCTTGCCATGCGATGGGCAATAGCAAACCAAGGTTTTCTTTTCC
GACATGTGGCTGTCAATGCCCAAGTGGTTCTGGAGCTATGCAAGAACTGC
AGAAGTGCTTACGGCTAGAGCCATGGAACCGTAATGCACGATACCTGCTT
GTGCTTAATCTCTTACAGAAAGCGCGTGAAGAGAGATTTCCTGTAAATGT
TTGTATCATACTTGAACGTCTCATAATTGTGGCTCTTTCTGATGAGTTCT
ATTCTGGAAAAGAAGCCTGTTGTCAATATCAGAAGTTTCAGCTTTATCTA
TGTGCTTCTGAAATATTTTTGCAAAGGGGGGATATCATTGGATGTATCAA
CCATTCAAAAAGTGCTTCAGCACTTTTGCTTCCCGATAGCTACCAGTTTT
TTGGGCACTTACTATTATGCCGTGGTTATGCTGCAGAAGGCAATTTTAAA
AATTCAAAAGAAGAGTATGAAAGGTGCTTGGAGCTTAAGACAGATTTTCA
TGCTGGTTGGGTATGCCTAAAATTAATGGAATCTCAATATGAAGTGCAAA
CCTTTTCAAATGTTGTTGAGTTAAGGTTCAAGGAATGCTCAAAAGGGCGG
AATAAGTCATGGAATATGTGGATGGCTGTATATAGTTTAGTGATGGGTCT
GACATGTATATGGAATCAGGATTTTCCTTCTGCAGAGAAATTTCTGGAGC
AAGCTTGTTCATTAGCCAGTGCGGAAAGCTGCATTTTCCTTTGTCATGGT
GTCACTTTTATGGAGCTAGCACGGCTGTTTCATGATTCGCAATTTTTATC
AAGTGCCATAAGGAGTCTCAGTAAAACTCATATGACTTCCTTGGTCCCAA
TACCTATCGTCTCAGCATTGTTGGCCCAAGCAGAAGGAAGCCTTGGTTCT
AGGAAAAAATGGGAGAGAAACCTTCGTCTTGAATGGTTTTCTTGGCCACC
AGAAATGAGACCTGCAGAGCTCTTTTTTCAAATGCATTTGCTTGCAAGAC
AGATTGAATCTGATTCTGACAGTTCGTCCAGGGTGGAGTGCTGTCAAAGT
CCCCAGCAATGGGTTCTTCGGGCAATCCATGCAAACCCTTCTAACTTGAG
ATATTGGAAAGTTCTGCAACAGCTTGTGTAA
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protein sequence of Tc08v2_p008220.2

>Tc08v2_p008220.2 ID=Tc08v2_p008220.2|Name=Tc08v2_p008220.2|organism=Theobroma cacao|type=polypeptide|length=1177bp
MDDFQEEEERRRLEELVESNPDDPSLHFQLGAYLWETGIGKEKAAEHWVI
SAKQNPNNAAAFRYLGHYYATVSADVQRAIKCYQRALSLHPDDSDAGEAL
CDLLDRQGKETLELAVCKDASHNSPRAFWAFRRLGFLQVHQKKWSEAVES
LQHAIRGYPTSPDLWEALGLAYHRLGMFTAAIKSYGRAVELEDTRIFALV
ECGNVFSMLGSFRKGIEQFQQALKISPQNLSALYGLASGLLGLSKECINS
GAFSWGASLLEDACTVAEVSIQLAGNSSCTWKLHGDIQLTYAQSYPWMEE
SQSLEYNVETFNESIYSWKNTCSLAAMSARNSYQRALHLAPWQANIYIDI
AICSDLISSFNMDCTHDRCTWQLSEKMTFGALVLEGDNYEFWVALGCLSH
CNALKQHALIRGLQLDVSLANAWAYLGKLYREENEKELARKAFDCSRGID
PSLALPWAGMSADTHTGESTPDDAFESCLRAVQILPVAEFQIGLAKLALL
SGNLSSSQVFGAIQQAVQRAPHYHESHNLNGLACEARFHFQSAIASYRLA
RYATTTISSGTVLKSHLKDISTNLARSLCKAGSAIDAVQECEDLKRKGML
DAEGLQVYAFSLWQLGEHEVALSVTRTLAASVSTMDRTSAAVSVSFICRL
LYYISGQDSAIVSILKMPKELFQSSKISFIVSAINALDQNNSLESIVSSS
RYFLASHGEITGMHYLIALSKLIKHGAEHHLGFQSGVSHLRKALHMYPNS
NLLRNLLGYLLLASEEWGNIHVSSRCSVVNASESKNNEGLKLAWEIFSAG
TVACHAMGNSKPRFSFPTCGCQCPSGSGAMQELQKCLRLEPWNRNARYLL
VLNLLQKAREERFPVNVCIILERLIIVALSDEFYSGKEACCQYQKFQLYL
CASEIFLQRGDIIGCINHSKSASALLLPDSYQFFGHLLLCRGYAAEGNFK
NSKEEYERCLELKTDFHAGWVCLKLMESQYEVQTFSNVVELRFKECSKGR
NKSWNMWMAVYSLVMGLTCIWNQDFPSAEKFLEQACSLASAESCIFLCHG
VTFMELARLFHDSQFLSSAIRSLSKTHMTSLVPIPIVSALLAQAEGSLGS
RKKWERNLRLEWFSWPPEMRPAELFFQMHLLARQIESDSDSSSRVECCQS
PQQWVLRAIHANPSNLRYWKVLQQLV*
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