Tc08v2_t007720.1

Overview
NameTc08v2_t007720.1
Unique NameTc08v2_t007720.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1002
Properties
Property NameValue
NoteCasein kinase II subunit alpha-1
Model evidenceSupporting evidence includes similarity to: 1 EST, 49 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcasein kinase II subunit alpha
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592005
GenbankXM_007018477.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g007720Tc08v2_g007720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p007720.1Tc08v2_p007720.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto399810auto399810Theobroma cacaoexon
exon-auto399811auto399811Theobroma cacaoexon
exon-auto399812auto399812Theobroma cacaoexon
exon-auto399813auto399813Theobroma cacaoexon
exon-auto399814auto399814Theobroma cacaoexon
exon-auto399815auto399815Theobroma cacaoexon
exon-auto399816auto399816Theobroma cacaoexon
exon-auto399817auto399817Theobroma cacaoexon
exon-auto399818auto399818Theobroma cacaoexon
exon-auto399819auto399819Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto399820auto399820Theobroma cacaoCDS
CDS-auto399821auto399821Theobroma cacaoCDS
CDS-auto399822auto399822Theobroma cacaoCDS
CDS-auto399823auto399823Theobroma cacaoCDS
CDS-auto399824auto399824Theobroma cacaoCDS
CDS-auto399825auto399825Theobroma cacaoCDS
CDS-auto399826auto399826Theobroma cacaoCDS
CDS-auto399827auto399827Theobroma cacaoCDS
CDS-auto399828auto399828Theobroma cacaoCDS
CDS-auto399829auto399829Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t007720.1 ID=Tc08v2_t007720.1|Name=Tc08v2_t007720.1|organism=Theobroma cacao|type=mRNA|length=1002bp
ATGTCGAGGGCTAGAGAGTACGCTAACGTCAACGTTCATCGTCCCAGAGA
TTACTGGGATTATGAATCTCTCACTGTTCAATGGGGTGATCAAGATCACT
ATGAGGTTGTTCGAAAAGTTGGGAGGGGAAAATACAGTGAGGTGTTTGAA
GGCATAAGCGTAATCAACAATGAAAAATGCATCATCAAAATCCTTAAACC
TGTCAAGAAAAAGAAGATAAAGCGGGAGATAAAAATACTGCAAAATCTTT
GTGGAGGCCCAAATATTGTAAAGCTGCTTGATGTTGTCAGAGATCATCAC
TCAAAAACTCCTAGCTTGATTTTTGAATATGTCAACAGCACTGATTTTAA
AGTTCTTTACCCTACACTGACCGACTATGACATCCGCTACTATATATATG
AGCTTCTTAAGGCACTGGATTATTGCCATTCTCAAGGTATAATGCATAGG
GATGTCAAGCCTCATAATGTTATGATTGACCATGAACTGCGGAAGCTTCG
CTTGATTGATTGGGGCCTTGCTGAATTCTACCATCCTAGCAAAGAATACA
ATGTTCGAGTAGCCTCAAGGTACTTTAAGGGACCTGAACTCCTTGTTGAT
TTGCAAGACTATGACTATTCATTAGACATGTGGAGCCTGGGGTGTATGTT
TGCCGGAATGATTTTTCGCAAAGAGCCATTCTTCTATGGTCATGATAATC
ATGACCAACTTGTTAAAATTGCCAAGGTGCTTGGAACAGATGAGTTAAAT
GCATATTTGAACAAATATCATTTAGAGCTTGATCCTCAGCTTGATGCTCT
TGTGGGAAGGCACAGCCGAAAGCCGTGGTCCCGATTTATTAATGCTAATA
ATCAGCATCTAGTTTCTCCAGAGGCCATTGATTTTCTCGATAAGCTTCTT
CGATATGATCATCAGGACAGGCTCACTGCCAGAGAGGCAATGGCTCATCC
GTACTTCTTCCAAGTGAGAAGTGCAGAGAACAATAGAATGCGGACACTAT
AA
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protein sequence of Tc08v2_p007720.1

>Tc08v2_p007720.1 ID=Tc08v2_p007720.1|Name=Tc08v2_p007720.1|organism=Theobroma cacao|type=polypeptide|length=334bp
MSRAREYANVNVHRPRDYWDYESLTVQWGDQDHYEVVRKVGRGKYSEVFE
GISVINNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDVVRDHH
SKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHR
DVKPHNVMIDHELRKLRLIDWGLAEFYHPSKEYNVRVASRYFKGPELLVD
LQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELN
AYLNKYHLELDPQLDALVGRHSRKPWSRFINANNQHLVSPEAIDFLDKLL
RYDHQDRLTAREAMAHPYFFQVRSAENNRMRTL*
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