Tc08v2_t007700.1

Overview
NameTc08v2_t007700.1
Unique NameTc08v2_t007700.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length759
Properties
Property NameValue
NotePutative Peroxisomal membrane protein PMP22
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductPXMP2/4 family protein 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592003
GenbankXM_018125927.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g007700Tc08v2_g007700Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p007700.1Tc08v2_p007700.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto399738auto399738Theobroma cacaoexon
exon-auto399739auto399739Theobroma cacaoexon
exon-auto399740auto399740Theobroma cacaoexon
exon-auto399741auto399741Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto399742auto399742Theobroma cacaoCDS
CDS-auto399743auto399743Theobroma cacaoCDS
CDS-auto399744auto399744Theobroma cacaoCDS
CDS-auto399745auto399745Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t007700.1 ID=Tc08v2_t007700.1|Name=Tc08v2_t007700.1|organism=Theobroma cacao|type=mRNA|length=759bp
ATGGGCAGCAGCGGCAACACTTTAAAAAGGTTGAGCAAACGCTGCCTCCT
TCGACTCTCCGCCGATTGCCATTCGCTCCTCCATGGGAAAAGCTTCGGCG
AAGCTACTCTTACGAGCCAAAGATGGAGACTTTGCCCCTTGTCTTCCCCT
TGTAAGCTCGCAGGTTTCAAAGGTGCTCCTCCTTCGCGTGCCTTTTCAAC
GTCGTCATCGTCATCAAAGGTCGGGTTTTTGCGATGGTATTTAGCGAAGC
TCGAATCCAAACCTCTTATTACGAAAGCTGTCACAACTTCAATTATCTTT
GCTGCTGCTGATTTCACATCCCAGATGATCACTTCAGAATCTTCTGGTTA
TGACTCAATAAGGACATTACGAATGGCTGCTTATGGGTTGCTTCTCTTGG
GGCCGTCACAACATCTTTGGTTTAACTTATTGTCAAAAGCTTTGCCCAGA
CGGGATATGCTGACAACCTTCAAGAAAATGTTTTTGGGGCAGGCTGTCTA
CGGACCTGTGAGCACTACAGTTTTCTTCTCCTATAATGCAGCTCTACAAG
GCGAAAGTGGTGAAGAGATTGTGGCTAGATTGAAGCGTGACCTCCTCCCG
ACATTGATAAATGGTGCTATGTTCTGGCCGCTCTGTGATTTTGTTACATA
CAAGTTTGTACCTGTTCATCTCCAGCCTTTAATGAACAGTACATGTGCCT
ACATATGGACAATTTATTTGACATACATGGCAAGCTTAAAGAAAGTGAGC
ATCGATTAG
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protein sequence of Tc08v2_p007700.1

>Tc08v2_p007700.1 ID=Tc08v2_p007700.1|Name=Tc08v2_p007700.1|organism=Theobroma cacao|type=polypeptide|length=253bp
MGSSGNTLKRLSKRCLLRLSADCHSLLHGKSFGEATLTSQRWRLCPLSSP
CKLAGFKGAPPSRAFSTSSSSSKVGFLRWYLAKLESKPLITKAVTTSIIF
AAADFTSQMITSESSGYDSIRTLRMAAYGLLLLGPSQHLWFNLLSKALPR
RDMLTTFKKMFLGQAVYGPVSTTVFFSYNAALQGESGEEIVARLKRDLLP
TLINGAMFWPLCDFVTYKFVPVHLQPLMNSTCAYIWTIYLTYMASLKKVS
ID*
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