Tc08v2_t007000.2

Overview
NameTc08v2_t007000.2
Unique NameTc08v2_t007000.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length942
Properties
Property NameValue
NoteBranched-chain-amino-acid aminotransferase 2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 2, chloroplastic, transcript variant X5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591915
GenbankXM_018125400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g007000Tc08v2_g007000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p007000.2Tc08v2_p007000.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto398309auto398309Theobroma cacaoexon
exon-auto398310auto398310Theobroma cacaoexon
exon-auto398311auto398311Theobroma cacaoexon
exon-auto398312auto398312Theobroma cacaoexon
exon-auto398313auto398313Theobroma cacaoexon
exon-auto398314auto398314Theobroma cacaoexon
exon-auto398315auto398315Theobroma cacaoexon
exon-auto398316auto398316Theobroma cacaoexon
exon-auto398317auto398317Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto398318auto398318Theobroma cacaoCDS
CDS-auto398319auto398319Theobroma cacaoCDS
CDS-auto398320auto398320Theobroma cacaoCDS
CDS-auto398321auto398321Theobroma cacaoCDS
CDS-auto398322auto398322Theobroma cacaoCDS
CDS-auto398323auto398323Theobroma cacaoCDS
CDS-auto398324auto398324Theobroma cacaoCDS
CDS-auto398325auto398325Theobroma cacaoCDS
CDS-auto398326auto398326Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t007000.2 ID=Tc08v2_t007000.2|Name=Tc08v2_t007000.2|organism=Theobroma cacao|type=mRNA|length=942bp
ATGGCTTTTAGAAGTGTATGCTTTCCCCAGTTTCTTCGATCTTTGGTCGG
CCCTGGCTGTTCCAAGGCTGGAGCTTGCCGTTATTTCGCACCTCGGGCTG
CGTCTGCCTCAAAGCAAGCCTGCGACCCTCCTTCCTACAGAGATGATGAG
AATGCTGACGTGGATTGGGAAAATCTTGGATTTAGTGCGGTGCAAACTGA
TTTTATGTACATCATGAAATGTTCGAAAGATGAAAATTTTGTACAAAGAC
AGCTTAGTCGCTACCGGAACATTGAATTCAACCCTTCAGCAGGAGTCTTA
AATTATGGACAGGGTATTTTTGAAGGTCTAAAAGCAAACAGGAAAGAAGA
TGGGAGCCTGCTTCTCTTCCGTCCAGATCAAAATGCCATCCGCATGAAGA
TTGGTGCTGAAAGAATGTGTATGCCCTCTCCATCCATTGATCAGTTTATC
GAGGCAGTGAAACAAACTGCTCTTGCCAATAAGCGTTGGGTTCCTCCACC
AAGAAAAGGGTCCCTCTACATTAGACCTTTGCTTATCGGAAGCGGCCCTG
TTTTGGGCATTGCTCCAGCACCTGAATACATGTTCCTCACATATGCTTCC
CCTGTTGGCAACTATTTCAAGCAAGGTAACGCACCTTTGAACTTATATGT
TGAAGAAGAATTAATTCGTGCCTCTCCTGGTGGAGCTGGAGGAGTGAAAT
CTATTTCAAATTATGCGCCAGTCGTGAAAGCACTAATCAGAGCAAGAAGC
CAGGGATTTTCTGATGTTTTGTACCTTGACTCAGTAAATAAGAAATATTT
GGAGGAACTCTCGGCTTCCAACATTTTCATTATCAAGGGGAATGTTATTG
CTACTCCTCCTACAAGTGGGACTATTCTTCCTGGAATCACACGTAAAAGC
ATTATCGACATTGCGTATGATCTTGGTTATCAGGTAACATAA
back to top

protein sequence of Tc08v2_p007000.2

>Tc08v2_p007000.2 ID=Tc08v2_p007000.2|Name=Tc08v2_p007000.2|organism=Theobroma cacao|type=polypeptide|length=314bp
MAFRSVCFPQFLRSLVGPGCSKAGACRYFAPRAASASKQACDPPSYRDDE
NADVDWENLGFSAVQTDFMYIMKCSKDENFVQRQLSRYRNIEFNPSAGVL
NYGQGIFEGLKANRKEDGSLLLFRPDQNAIRMKIGAERMCMPSPSIDQFI
EAVKQTALANKRWVPPPRKGSLYIRPLLIGSGPVLGIAPAPEYMFLTYAS
PVGNYFKQGNAPLNLYVEEELIRASPGGAGGVKSISNYAPVVKALIRARS
QGFSDVLYLDSVNKKYLEELSASNIFIIKGNVIATPPTSGTILPGITRKS
IIDIAYDLGYQVT*
back to top