Tc08v2_t006980.1

Overview
NameTc08v2_t006980.1
Unique NameTc08v2_t006980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1182
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 5, chloroplastic, transcript variant X1
NoteBranched-chain-amino-acid aminotransferase 5, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591913
GenbankXM_007018340.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g006980Tc08v2_g006980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p006980.1Tc08v2_p006980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto398233auto398233Theobroma cacaoexon
exon-auto398234auto398234Theobroma cacaoexon
exon-auto398235auto398235Theobroma cacaoexon
exon-auto398236auto398236Theobroma cacaoexon
exon-auto398237auto398237Theobroma cacaoexon
exon-auto398238auto398238Theobroma cacaoexon
exon-auto398239auto398239Theobroma cacaoexon
exon-auto398240auto398240Theobroma cacaoexon
exon-auto398241auto398241Theobroma cacaoexon
exon-auto398242auto398242Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto398243auto398243Theobroma cacaoCDS
CDS-auto398244auto398244Theobroma cacaoCDS
CDS-auto398245auto398245Theobroma cacaoCDS
CDS-auto398246auto398246Theobroma cacaoCDS
CDS-auto398247auto398247Theobroma cacaoCDS
CDS-auto398248auto398248Theobroma cacaoCDS
CDS-auto398249auto398249Theobroma cacaoCDS
CDS-auto398250auto398250Theobroma cacaoCDS
CDS-auto398251auto398251Theobroma cacaoCDS
CDS-auto398252auto398252Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t006980.1 ID=Tc08v2_t006980.1|Name=Tc08v2_t006980.1|organism=Theobroma cacao|type=mRNA|length=1182bp
ATGCTCCTTGTTCCGCTAAGCTTTACCAACGCTACTATTGTCCAATTCTC
CTCTTCTCTCAAGGTCCATCATCAGCTTCGTTTGGCTGCTACATCTTCAC
AGGGCTCCTTGCCTTCCTCTTCTTCATGGCGCCGAGCCACTTCATCGGAT
TCTCATAGTGAAACATCTGAATCAGCTGATAGAAGATGGGATAGCCTTGG
ATTCAATCCCGTGCAAACGGACTATATGTATGTTATGAAAAGTTCTGAGG
ATGGAAGCTTTGCAGATGGTGGCTTAAGACGTTATGGGAACATTGAAATA
ATTCCAGCAGCGGCTGTCTTGAACTATGGGCAGGGGATTATTGAGGGTCT
GAAAGCATACAAGAAACAAAATGGATCTATTATACTTTTTCGTCCTGAGG
AAAATGGATTGCGGCTGAGGGTAGGTGCAGAAAGACTGTGCATGCCTGCA
CCAACTATTGAGCAGTTTGTGGAAGCTGTAAAAAGTACTGTATTGGCAAA
TAAGCGCTGGGTCCCTCCTCCAGACAAAGGCTTTTTACACATTCGACCTC
TACTTCTGGGGAATGGACCTGTTCTTAGTCTCACAACAGCTCCAGAATTC
ACCTTTTTGATCTATGTTACTCCAGTTGGAAATTATTTTGAGGGTGGTTT
GAAACCAATTAATCTGGTGGTTGAAAATGAAACACATCGTGCAGCCCCTG
GAGGAGTTGGAAGCATTAAAGCTATAGGAAACTATGCTGGGATTATTAAG
GCACAGGCCGCAGCTAAAGTGAATGGTTTCTCTGATGTTTTGTATCTTGA
CTCTGTTCACAATAAATATCTTGAAGAGATTTCTACCGCTAACCTTTTTG
TTGTGAAGAATAATACAATCTCTACCCCAACACTAGGGGGGACAATTCTT
CCTGGGGTTACAAGAAAAAGTATTATTGCTATTGCTCTCAGCCAAGGGTT
CCAGGTTGAGGAGCGACTTGTATCGGTTGAGGAATTGTCTGATGCCGATG
AAGTTTTTTGTAGTGAAAATGCTCTTTGTGTTTTGCCTGTTGGCAGCATC
ACATACATGGATAAAAGGGTGGACTATGAAGAGAGTGGATTTGTAGTATC
TCAGCAGCTCTACTCAGCGCTTACAAATATACAGATGGGTCTTACGGAAG
ACATAATGGGTTGGACTACGGTGTTGGAGTAG
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protein sequence of Tc08v2_p006980.1

>Tc08v2_p006980.1 ID=Tc08v2_p006980.1|Name=Tc08v2_p006980.1|organism=Theobroma cacao|type=polypeptide|length=394bp
MLLVPLSFTNATIVQFSSSLKVHHQLRLAATSSQGSLPSSSSWRRATSSD
SHSETSESADRRWDSLGFNPVQTDYMYVMKSSEDGSFADGGLRRYGNIEI
IPAAAVLNYGQGIIEGLKAYKKQNGSIILFRPEENGLRLRVGAERLCMPA
PTIEQFVEAVKSTVLANKRWVPPPDKGFLHIRPLLLGNGPVLSLTTAPEF
TFLIYVTPVGNYFEGGLKPINLVVENETHRAAPGGVGSIKAIGNYAGIIK
AQAAAKVNGFSDVLYLDSVHNKYLEEISTANLFVVKNNTISTPTLGGTIL
PGVTRKSIIAIALSQGFQVEERLVSVEELSDADEVFCSENALCVLPVGSI
TYMDKRVDYEESGFVVSQQLYSALTNIQMGLTEDIMGWTTVLE*
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