Tc08v2_t006400.1

Overview
NameTc08v2_t006400.1
Unique NameTc08v2_t006400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length321
Properties
Property NameValue
NoteTranscription initiation factor IIA subunit 2
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttranscription initiation factor IIA subunit 2, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591836
GenbankXM_007018224.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g006400Tc08v2_g006400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p006400.1Tc08v2_p006400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto396835auto396835Theobroma cacaoexon
exon-auto396836auto396836Theobroma cacaoexon
exon-auto396837auto396837Theobroma cacaoexon
exon-auto396838auto396838Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto396839auto396839Theobroma cacaoCDS
CDS-auto396840auto396840Theobroma cacaoCDS
CDS-auto396841auto396841Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t006400.1 ID=Tc08v2_t006400.1|Name=Tc08v2_t006400.1|organism=Theobroma cacao|type=mRNA|length=321bp
ATGGCGACGTTTGAGCTTTACCGGAGGTCAACGATCGGCATGTGCTTGAC
GGAAACTTTAGACGAGATGGTTTCAAACGGTACTCTCAGCCCTGAGCTCG
CTATTCAGGTTCTCGTCCAGTTCGATAAGTCTATGACTGAAGCCCTGGAA
AGTCAAGTGAAGAGCAAGGTTGCCATTAAGGGACATCTGCACACTTATAG
ATTCTGCGACAATGTGTGGACCTTCATCTTACAGGATGCTGTGTTTAAGT
ACGAGGATGCTTCTGAGACTGTTGGTCGGGTGAAAATAGTAGCATGTGAT
TCAAAGCTGCTCTCACAATGA
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protein sequence of Tc08v2_p006400.1

>Tc08v2_p006400.1 ID=Tc08v2_p006400.1|Name=Tc08v2_p006400.1|organism=Theobroma cacao|type=polypeptide|length=107bp
MATFELYRRSTIGMCLTETLDEMVSNGTLSPELAIQVLVQFDKSMTEALE
SQVKSKVAIKGHLHTYRFCDNVWTFILQDAVFKYEDASETVGRVKIVACD
SKLLSQ*
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