Tc08v2_t006130.1

Overview
NameTc08v2_t006130.1
Unique NameTc08v2_t006130.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1572
Properties
Property NameValue
NoteArgininosuccinate lyase, chloroplastic
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productargininosuccinate lyase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591808
GenbankXM_007018166.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g006130Tc08v2_g006130Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p006130.1Tc08v2_p006130.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto396002auto396002Theobroma cacaoexon
exon-auto396003auto396003Theobroma cacaoexon
exon-auto396004auto396004Theobroma cacaoexon
exon-auto396005auto396005Theobroma cacaoexon
exon-auto396006auto396006Theobroma cacaoexon
exon-auto396007auto396007Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto396008auto396008Theobroma cacaoCDS
CDS-auto396009auto396009Theobroma cacaoCDS
CDS-auto396010auto396010Theobroma cacaoCDS
CDS-auto396011auto396011Theobroma cacaoCDS
CDS-auto396012auto396012Theobroma cacaoCDS
CDS-auto396013auto396013Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t006130.1 ID=Tc08v2_t006130.1|Name=Tc08v2_t006130.1|organism=Theobroma cacao|type=mRNA|length=1572bp
ATGGAATCATTACTCTCTTCGCCAACCCCATTTTTTTCTTCACCATCGAC
CTTCGTCTCCAGCCAATCCGTGTCCAACCCAAGACCCATACTCCCATTGC
TGCATAGATCCAAGCCAAGGTTCGAGCCATTGTGGTGCACCATGGGCCAG
TCCTCTGAAACCGAGACTAAACCCAAGGAGACAAAGTTGTGGGGTGGCAG
ATTCGAAGAGAGTGTGACGGATATCGTTGAGAAGTTCACTGAGTCTATAT
CGTTTGATAGACAGTTGTATAAACATGATATTATGGGTAGTAAAGCTCAT
GCGTCTATGCTTGCTGAACAGGGGTTGATTAGTGTAAGTGATAGGGATAG
TATTTTGCAAGGCCTAGATGAGATAGAGAGACGCATTGAAGCTGGTGAAT
TTGTGTGGAGAACTGATAGGGAGGATGTGCACATGAACATTGAAGCAGCA
CTAACAGATATGGTTGGTGAGCCTGCAAAGAAGCTCCACACTGCTCGAAG
CAGAAATGATCAAGTTTTAACTGATTTTCGCCTTTGGTGCCGTGATGCTA
TTGACAGGATTATTGCTAGCATTAGACATCTCCAGGTTGCTTTGGTGAAA
TTGGCTCTAAATAATGAGGGTTTGATCATTCCTGGATATACACATTTGCA
GAGAGCGCAACCTGTTTTATTGCAACATCTTCTCTTAGCATATGTGGAAC
AGCTTGACCGTGATGCTGGCCGTTTACTAGATTGCAGAGCTAGGTTGAAT
TTCTGCCCACTAGGTGCATGTGCACTGGCTGGCACTGGCCTACCCATTGA
TAGGTTTTGGACTTCTGATGCTTTGGGATTCAGTGCTCCCATGAGGAACA
GTATTGATGCAGTTTCAGATCGAGATTTTGTCCTAGAGTTTCTTTCTGCT
AATTCCATCATAGCGATTCATCTTTCTCGGCTGGGTGAAGAATGGGTATT
GTGGGCTTCAGAGGAGTTTGGATTCATCACACCAAGTGACTCTGTTTCCA
CTGGAAGTAGCATAATGCCTCAAAAGAAAAATCCAGATCCAATGGAGCTT
GTTCGAGGAAAGTCTGCTAGAGTGATTGGAGACCTGGTTACCCTTCTCAC
ATTGTGCAAAGGACTTCCTCTTGCGTATAATCGGGATTTGCAGGAAGATA
AAGAACCTATGTTTGATAGCGTCAAGACCATTATAGGCATGCTTGAAGTG
TCAGCAGAGTTTGCTCAAAATATTGCTTTCAATGAGGAAAGAATACAGAA
GGCTTTACCAGCAGGTTATCTTGATGCCACAACACTTGCTGATTATCTAG
TTAAAAAGGGGATACCATTCAGAACTTCTCATGATATAGTTGGACGGTCG
GTTGCGTTATGTGTTGCCAAGAACTGCCAGCTTCAGGACCTAAGTCTAGA
TGAGTTGAGAAGCCTAAATCCTGTATTTGATCACGATGTGTATGAGTTTC
TTGGGGTAGAAAACGCAGTCAAGAAATTCAGTTCGTATGGTTCCACAGGT
TCAGCATGTGTAGCTGATCAACTTGACTATTGGGTTACCAAACTTGAAAT
CAACAGAACAAGACCTCAATGA
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protein sequence of Tc08v2_p006130.1

>Tc08v2_p006130.1 ID=Tc08v2_p006130.1|Name=Tc08v2_p006130.1|organism=Theobroma cacao|type=polypeptide|length=524bp
MESLLSSPTPFFSSPSTFVSSQSVSNPRPILPLLHRSKPRFEPLWCTMGQ
SSETETKPKETKLWGGRFEESVTDIVEKFTESISFDRQLYKHDIMGSKAH
ASMLAEQGLISVSDRDSILQGLDEIERRIEAGEFVWRTDREDVHMNIEAA
LTDMVGEPAKKLHTARSRNDQVLTDFRLWCRDAIDRIIASIRHLQVALVK
LALNNEGLIIPGYTHLQRAQPVLLQHLLLAYVEQLDRDAGRLLDCRARLN
FCPLGACALAGTGLPIDRFWTSDALGFSAPMRNSIDAVSDRDFVLEFLSA
NSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMEL
VRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPMFDSVKTIIGMLEV
SAEFAQNIAFNEERIQKALPAGYLDATTLADYLVKKGIPFRTSHDIVGRS
VALCVAKNCQLQDLSLDELRSLNPVFDHDVYEFLGVENAVKKFSSYGSTG
SACVADQLDYWVTKLEINRTRPQ*
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