Tc08v2_t005880.1

Overview
NameTc08v2_t005880.1
Unique NameTc08v2_t005880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1869
Properties
Property NameValue
NoteGlucose-6-phosphate isomerase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 12 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productglucose-6-phosphate isomerase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591788
GenbankXM_018126142.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g005880Tc08v2_g005880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p005880.1Tc08v2_p005880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto394856auto394856Theobroma cacaoexon
exon-auto394857auto394857Theobroma cacaoexon
exon-auto394858auto394858Theobroma cacaoexon
exon-auto394859auto394859Theobroma cacaoexon
exon-auto394860auto394860Theobroma cacaoexon
exon-auto394861auto394861Theobroma cacaoexon
exon-auto394862auto394862Theobroma cacaoexon
exon-auto394863auto394863Theobroma cacaoexon
exon-auto394864auto394864Theobroma cacaoexon
exon-auto394865auto394865Theobroma cacaoexon
exon-auto394866auto394866Theobroma cacaoexon
exon-auto394867auto394867Theobroma cacaoexon
exon-auto394868auto394868Theobroma cacaoexon
exon-auto394869auto394869Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto394870auto394870Theobroma cacaoCDS
CDS-auto394871auto394871Theobroma cacaoCDS
CDS-auto394872auto394872Theobroma cacaoCDS
CDS-auto394873auto394873Theobroma cacaoCDS
CDS-auto394874auto394874Theobroma cacaoCDS
CDS-auto394875auto394875Theobroma cacaoCDS
CDS-auto394876auto394876Theobroma cacaoCDS
CDS-auto394877auto394877Theobroma cacaoCDS
CDS-auto394878auto394878Theobroma cacaoCDS
CDS-auto394879auto394879Theobroma cacaoCDS
CDS-auto394880auto394880Theobroma cacaoCDS
CDS-auto394881auto394881Theobroma cacaoCDS
CDS-auto394882auto394882Theobroma cacaoCDS
CDS-auto394883auto394883Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t005880.1 ID=Tc08v2_t005880.1|Name=Tc08v2_t005880.1|organism=Theobroma cacao|type=mRNA|length=1869bp
ATGGCCTCGCTCTCAGGCCTCTGCTCTTCTTCCCCTTCTTTGAAGCCCAA
GCATAACCGAATCACGAAACTCACTCCTTCACTTCGCAAAGACTCGCTCG
CATTCTCAGCTCGTTCTGCTGCGAGCTCTAAACTCGTCGGGGCTCACTTC
GTCGCCCGTGAAATATCTGCCGATTTGTCCAAAACGAACAACGTCGGCAT
TTTGAAGAAGGCCAAGAAAGGAGGGCTCGAGAAAGATCCTAAAGCGCTGT
GGAGGAGGTACGTTGACTTGTTGTACCAGCACAAGGAGCTCGGGTTGTAC
CTCGATGTGAGTAGGATCGGGTTCTCGGATGAGTTTGTTGCCGAAATGGA
GCCTCGATTCCAGGCCGCGTTTAAAGCCATGGAGGAATTGGAAAAAGGTG
CCATCGCGAATCCCGATGAAGGACGTATGGTGGGCCACTATTGGTTGAGG
AACGCGAAACTCGCGCCAAATTCCTTTTTGCGGGTACAGATTGAGAACAC
TCTCGACGCCGTTTGCAAGTTCGCTGATGACGTCATCAGCGGTAAGATTA
AACCTCCGTCTTCTCCAGAGGGTCGTTTTACTCAAATACTCTCAGTTGGG
ATTGGAGGTTCGGCTCTGGGCCCACAATTTGTCGCGGAGGCATTGGCTCC
TGATAATCCTTCTCTAAAGATAAGATTCATTGATAATACAGATCCTGCTG
GAATAGATCATCAGATTGCACAGCTTGGCTCCGAGCTGGCTTCTACACTT
GTAATTGTTATTTCAAAGAGTGGAGGTACCCCTGAAACAAGAAATGGTCT
GTTGGAAGTACAGAAAGCCTTCCGTGAAGCTGGTCTGGAATTTGCAAAAC
AGGGTGTTGCTATAACACAAGAAAAGTCTTTGTTAGACAACACAGCTAGG
ATTGAGGGTTGGGTAGCCAGATTCCCCATGTTTGACTGGGTTGGCGGCAG
GACATCTGAAATGTCTGCAGTTGGCCTACTTCCAGCAGCACTTCAGGGAA
TTGACATAAGAGAAATGCTTGTTGGTGCATCTATGATGGATGAGGCAACT
AGGTGCACAGAGCTTAAAAATAATCCTGCAGCATTGCTGGCTTTATGTTG
GTATTGGGCATCTGATGGGATTGGATCTAAGGATATGGTTGTCCTTCCTT
ACAAGGACAGCTTATTACTATTTAGTAGGTATTTACAGCAGCTGGTTATG
GAATCACTTGGCAAGGAGTTTGACCTGGATGGTAACCGGGTGAATCAAGG
AATTACTGTTTATGGGAATAAAGGGAGCACAGATCAGCATGCCTATATTC
AACAACTGAGGGAGGGTGTGCACAATTTCTTTGTGACATTCATTGAAGTG
CTACTTGATAGACCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTTAC
ATGTGGTGACTACCTATTTGGAATGCTACAGGGAACAAGATCAGCTCTGT
ATGCAAATAACCGCGAGTCCATCACTGTTACTGTCCAAGAGGTGACACCC
AGATCTGTTGGGGCTCTCATAGCACTTTATGAGCGAGCAGTTGGAATTTA
TGCCTCACTTACAAATATTAATGCTTACCATCAACCTGGTGTGGAAGCTG
GGAAAAAGGCTGCTGGTGAAGTATTAGCTCTACAGAAGCGAGTTTTAGCA
GTACTCAATGAGGCCAGCTGTAAGGAACCTGTGGAGCCATTGACACTTGA
AGAAGTGGCTGATCGTTGCCATGCTCCTGAACACATTGAAATGATCTACA
AAATCATTGAGCACATGGCTGCCAATGACAGAGCACTAATTGCCGAAGGT
AATTGTGGTTCACCACATAGCTTAAAGGTTTTCCTTGGGGAGTGTAATGT
GGATGAAATGTATGCTTAA
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protein sequence of Tc08v2_p005880.1

>Tc08v2_p005880.1 ID=Tc08v2_p005880.1|Name=Tc08v2_p005880.1|organism=Theobroma cacao|type=polypeptide|length=623bp
MASLSGLCSSSPSLKPKHNRITKLTPSLRKDSLAFSARSAASSKLVGAHF
VAREISADLSKTNNVGILKKAKKGGLEKDPKALWRRYVDLLYQHKELGLY
LDVSRIGFSDEFVAEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLR
NAKLAPNSFLRVQIENTLDAVCKFADDVISGKIKPPSSPEGRFTQILSVG
IGGSALGPQFVAEALAPDNPSLKIRFIDNTDPAGIDHQIAQLGSELASTL
VIVISKSGGTPETRNGLLEVQKAFREAGLEFAKQGVAITQEKSLLDNTAR
IEGWVARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLVGASMMDEAT
RCTELKNNPAALLALCWYWASDGIGSKDMVVLPYKDSLLLFSRYLQQLVM
ESLGKEFDLDGNRVNQGITVYGNKGSTDQHAYIQQLREGVHNFFVTFIEV
LLDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTP
RSVGALIALYERAVGIYASLTNINAYHQPGVEAGKKAAGEVLALQKRVLA
VLNEASCKEPVEPLTLEEVADRCHAPEHIEMIYKIIEHMAANDRALIAEG
NCGSPHSLKVFLGECNVDEMYA*
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