Tc08v2_t005140.1

Overview
NameTc08v2_t005140.1
Unique NameTc08v2_t005140.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1479
Properties
Property NameValue
NoteCatalase isozyme 1
Model evidenceSupporting evidence includes similarity to: 73 ESTs, 60 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcatalase isozyme 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591705
GenbankXM_007017972.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g005140Tc08v2_g005140Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p005140.1Tc08v2_p005140.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto392867auto392867Theobroma cacaoexon
exon-auto392868auto392868Theobroma cacaoexon
exon-auto392869auto392869Theobroma cacaoexon
exon-auto392870auto392870Theobroma cacaoexon
exon-auto392871auto392871Theobroma cacaoexon
exon-auto392872auto392872Theobroma cacaoexon
exon-auto392873auto392873Theobroma cacaoexon
exon-auto392874auto392874Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto392875auto392875Theobroma cacaoCDS
CDS-auto392876auto392876Theobroma cacaoCDS
CDS-auto392877auto392877Theobroma cacaoCDS
CDS-auto392878auto392878Theobroma cacaoCDS
CDS-auto392879auto392879Theobroma cacaoCDS
CDS-auto392880auto392880Theobroma cacaoCDS
CDS-auto392881auto392881Theobroma cacaoCDS
CDS-auto392882auto392882Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t005140.1 ID=Tc08v2_t005140.1|Name=Tc08v2_t005140.1|organism=Theobroma cacao|type=mRNA|length=1479bp
ATGGATCCCTACAAGTACCGCCCATCAAGTGCTTTCAATTCCCCATTCTG
GACAACTAATTCTGGTGCGCCAGTTTGGAACAACAACTCATCACTCACTG
TCGGACCCAGAGGTCCAATTCTCCTTGAGGACTATCATCTGGTGGAGAAG
CTTGCCAACTTTGATAGGGAGCGGATTCCAGAACGTGTTGTCCATGCTAG
GGGAGCCAGTGCAAAGGGTTTCTTTGAGGTCACCCATGACATTTCTCACC
TTACATGTGCAGATTTTCTGCGAGCCCCTGGAGTTCAGACCCCTGTTATT
GTACGTTTCTCAACTGTCATCCATGAGCGTGGAAGCCCCGAAACCCTGAG
GGACCCTCGTGGTTTTGCAGTGAAGTTTTACACCCGAGAGGGTAATTTTG
ATCTTGTCGGAAACAATTTCCCCGTCTTCTTTGTTCGTGATGGAATGAAA
TTCCCTGATATGGTCCATGCTCTTAAACCCAACCCTAAGTCTCACATCCA
GGAGAACTGGAGGATCCTTGATTTCTTCTCGCACCATCCTGAGAGCTTGC
ACATGTTTACTTTCCTCTTTGATGATTTGGGTGTTCCACAAGATTACAGA
CACATGGAAGGTTCTGGTGTGAACACCTATACTCTGATCAACAAGGCTGG
AAAAGCACACTATGTGAAATTCCATTGGAAACCCACTTGTGGGGTCAAAT
GCTTGCTGGAAGAAGAGGCAATCAAGGTTGGAGGAGCTAATCATAGCCAT
GCCACTCAGGATCTCTATGACTCAATTGCAGCTGGAAACTATCCTGAGTG
GAAGCTTTTCATCCAGACAATGGATCCTGACCATGAAGACAGATTCGACT
TTGACCCACTTGATGTGACCAAGACCTGGCCTGAGGACATCTTGCCCCTG
CAGCCTGTTGGGCGCTTGGTGTTGAATAAGAACATTGACAACTTCTTTGC
CGAAAATGAACAGCTTGCATTTTGCCCTGCCATTGTGGTTCCTGGAATCT
ACTACTCAGATGATAAGTTGCTTCAGACTCGTATTTTCTCCTACGCTGAT
ACCCAGAGGCACAGGCTTGGACCAAACTATCTGCTACTCCCACCCAACGC
TCCCAAGTGTGCTCATCACAACAATCACCATGAAGGTTTTATGAATTTCA
TGCACAGGGATGAGGAGATCAATTACTTCCCTTCAAGGTATGATCCTGTT
CGTCATGCTGAGAGGTTCCCTATCCCTCCTGCTGTTTGCAGTGGAAGGCG
TGAGAAGTGCATCATTGAGAAGGAGAACAACTTTAAACAGCCAGGAGAGA
GATACCGATCCTGGGCACCAGACAGGCAAGAACGATTCATCTGCCGTTGG
GTTGATGCCTTGTCTGATCCACGTGTCACTCATGAAATCCGCAGCATATG
GATCACATACTGGTCTCAGGCTTGCAAATCTTTGGGTCAGAAGCTAGCAT
CTCGTCTCAATGTGAAGCCAAACATTTGA
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protein sequence of Tc08v2_p005140.1

>Tc08v2_p005140.1 ID=Tc08v2_p005140.1|Name=Tc08v2_p005140.1|organism=Theobroma cacao|type=polypeptide|length=493bp
MDPYKYRPSSAFNSPFWTTNSGAPVWNNNSSLTVGPRGPILLEDYHLVEK
LANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVI
VRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMK
FPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDLGVPQDYR
HMEGSGVNTYTLINKAGKAHYVKFHWKPTCGVKCLLEEEAIKVGGANHSH
ATQDLYDSIAAGNYPEWKLFIQTMDPDHEDRFDFDPLDVTKTWPEDILPL
QPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFSYAD
TQRHRLGPNYLLLPPNAPKCAHHNNHHEGFMNFMHRDEEINYFPSRYDPV
RHAERFPIPPAVCSGRREKCIIEKENNFKQPGERYRSWAPDRQERFICRW
VDALSDPRVTHEIRSIWITYWSQACKSLGQKLASRLNVKPNI*
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