Tc08v2_t003990.1

Overview
NameTc08v2_t003990.1
Unique NameTc08v2_t003990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2373
Properties
Property NameValue
NoteVacuolar protein sorting-associated protein 35B
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productvacuolar protein sorting-associated protein 35B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591586
GenbankXM_018126252.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g003990Tc08v2_g003990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p003990.1Tc08v2_p003990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto390478auto390478Theobroma cacaoexon
exon-auto390479auto390479Theobroma cacaoexon
exon-auto390480auto390480Theobroma cacaoexon
exon-auto390481auto390481Theobroma cacaoexon
exon-auto390482auto390482Theobroma cacaoexon
exon-auto390483auto390483Theobroma cacaoexon
exon-auto390484auto390484Theobroma cacaoexon
exon-auto390485auto390485Theobroma cacaoexon
exon-auto390486auto390486Theobroma cacaoexon
exon-auto390487auto390487Theobroma cacaoexon
exon-auto390488auto390488Theobroma cacaoexon
exon-auto390489auto390489Theobroma cacaoexon
exon-auto390490auto390490Theobroma cacaoexon
exon-auto390491auto390491Theobroma cacaoexon
exon-auto390492auto390492Theobroma cacaoexon
exon-auto390493auto390493Theobroma cacaoexon
exon-auto390494auto390494Theobroma cacaoexon
exon-auto390495auto390495Theobroma cacaoexon
exon-auto390496auto390496Theobroma cacaoexon
exon-auto390497auto390497Theobroma cacaoexon
exon-auto390498auto390498Theobroma cacaoexon
exon-auto390499auto390499Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto390500auto390500Theobroma cacaoCDS
CDS-auto390501auto390501Theobroma cacaoCDS
CDS-auto390502auto390502Theobroma cacaoCDS
CDS-auto390503auto390503Theobroma cacaoCDS
CDS-auto390504auto390504Theobroma cacaoCDS
CDS-auto390505auto390505Theobroma cacaoCDS
CDS-auto390506auto390506Theobroma cacaoCDS
CDS-auto390507auto390507Theobroma cacaoCDS
CDS-auto390508auto390508Theobroma cacaoCDS
CDS-auto390509auto390509Theobroma cacaoCDS
CDS-auto390510auto390510Theobroma cacaoCDS
CDS-auto390511auto390511Theobroma cacaoCDS
CDS-auto390512auto390512Theobroma cacaoCDS
CDS-auto390513auto390513Theobroma cacaoCDS
CDS-auto390514auto390514Theobroma cacaoCDS
CDS-auto390515auto390515Theobroma cacaoCDS
CDS-auto390516auto390516Theobroma cacaoCDS
CDS-auto390517auto390517Theobroma cacaoCDS
CDS-auto390518auto390518Theobroma cacaoCDS
CDS-auto390519auto390519Theobroma cacaoCDS
CDS-auto390520auto390520Theobroma cacaoCDS
CDS-auto390521auto390521Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t003990.1 ID=Tc08v2_t003990.1|Name=Tc08v2_t003990.1|organism=Theobroma cacao|type=mRNA|length=2373bp
ATGATGTTAAACGGAGCAGAGGACGAAGAGAAATGGCTGGCGGAAGGCAT
CGCCGGAATTCAACACAACGCCTTTTACATGCATCGAGCTTTGGACTCCA
ATAATCTCAGAGAAGCTCTCAAGTACTCAGCTCAGATGCTGTCGGAGCTC
CGGACCTCCAAACTCTCTCCTCACAAATACTACGACCTCTATATGCGAGC
TTTTGATGAATTGAGGAAATTGGAGATTTTCTTCAAAGACGAAGGCAAGC
ACGGTGTATCTGTGGTTGATCTGTACGAGCTTGTTCAGCATGCCGGCAAT
ATCTTGCCTAGATTGTATCTCCTATGTACGGTAGGATCTGTCTATATTAA
ATCTAAGGAGGCTCCTGCTAAGGAAGTTCTTAAAGACCTTGTGGAAATGT
GTCGTGGAGTTCAACATCCACTACGTGGACTTTTTTTAAGGAGTTACCTT
GCTCAAGTCAGTCGAGACAAGTTACCGGATATTGGTTCTGAGTATGAAGG
AGATGCTGACACTGTGATGGATGCTGTGGAATTTGTACTGCAGAATTTCA
CCGAGATGAATAAACTTTGGGTGCGAATGCAGCATCAGGGACCTGGTAGA
CTTAGAGAGAAGCGGGAAAAAGAAAGGAATGAACTTCGAGATCTTGTAGG
GAAAAATCTCCATGTTCTCAGCCAGATAGAAGGGGTAGATCTTGAGATGT
ACAAAGAAACAGTTCTGCCTAGAGTCTTAGAGCAGGTTGTCAATTGCAAA
GACGATCTTTCGCAATATTATTTGATGGATTGCATAATTCAGGTGTTCCC
TGACGAGTATCACTTGCAGACTCTTGAGACATTATTGGGTGCTTGCCCCC
AGCTCCAGCCAACCGTTGACATTAAGACAGTCTTGTCTCGACTAATGGAC
AGACTGTCAAATTATGCTGCTTCGAGTGCAGATGTATTACCTGAATTTCT
GCAAGTAGAAGCATTTGCTAAATTGAGCAATGCAATTGGGAAGGTCATAG
AAGCACAGGTTGACATGCCTGCGGTCGGAGCTATAACTTTGTATGTCTCT
CTTCTTACCTTTACTCTTCGTGTTCATCCTGATCGGCTTGATTATGTGGA
TCTAGTACTGGGAGCCTGTGTTAAGAAGCTCTCTAGCATACCAAAACTTG
ACGATAGCCGGGCAACGAAACAAGTGGTTGCACTTTTGAGTGCTCCACTG
GAGAAATACAATGATATAGTAACAGCCCTGACACTTTCTAATTATCCTCG
TGTAATGGACCATCTCGATAACGGAACAAATAAAGTTATGGCAATGGTTA
TCATTCAAAGCATTATGAAAAACAACACTTGCATTTCAACTGTTGACAAG
GTTGAGGTGTTGTTCGAATTGATAAAAGGTCTCATCAAGGATACGGATGG
TGCTGATGTGGATGAGCTTGATGAGGAGGATTTCAAGGATGAACAAAATG
CTGTTGCTCGGCTTATACACATGCTTTACAACAATGAACCAGAGGAAATG
TTGAAGATTATATGTACCGTGAGGAAGCATACAATGGCTGGGGGACCAAA
ACGCCTGCCTTTTACAGTTCCTTCTCTTGTGTTTTCTGCACTTAGATTGA
TTAGGCAATTGCAAGGTCAGGAGGGAGATATAGTGGGAGAAGAAGTGCCA
GCTACACCAAAGAAAATTTTTCAGCTCCTGAATCAGATCATTGAGGATCT
TTCAAATGTTCCATCACCTGAACTTGCATTAAGGTTGTCCCTCCAATGTG
CTGAGGCAGCTAATGACTGCGACCTTGAGCATGTTGCTTATGAATTTTTC
ACTCAAGCATTTGTGTTATATGAAGAAGAAATTGCGGACTCCAAAGCCCA
AGTGACCGCAATTCATCTGATAATCGGGACTCTCCAGAGGATGAATGTAT
TTGGTGTTGAGAACCGAGACACTTTGACGCACAAGGCCACAGGGTATTCA
GCTAGGCTATTGAAGAAGCCTGATCAGTGCAGAGCTGTTTATGCATGTTC
ACATCTTTTTTGGGTAGATGATCAAGATGGCATCAAGGATGGGGAAAGGG
TCCTGCTTTGCCTAAAGCGTGCATTGAGGATCGCAAATGCTGCTCAGCAA
ATGGCAAATGTTGCACGAGGTAGCAGTGGGCCAGTCACACTCTTTGTTGA
GATATTAAACAAGTACCTCTACTTCTTCGAAAAAGGAAATCAGCAAATCA
CGGGTGCAGCAATCCAAGGCCTGATAGAACTAATCAATACCGAGAAGCAG
AATGATTCTGCAACCCCAGATAGTGCTTCAGATGCTTTCCTTGCAAGCAC
GATGCGTTACATTCAGTTCCAGAGACAAAAAGGTGGTATAATGGGTGAGA
AATTTGAATCCATTAAATTGTAA
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protein sequence of Tc08v2_p003990.1

>Tc08v2_p003990.1 ID=Tc08v2_p003990.1|Name=Tc08v2_p003990.1|organism=Theobroma cacao|type=polypeptide|length=791bp
MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSEL
RTSKLSPHKYYDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGN
ILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPLRGLFLRSYL
AQVSRDKLPDIGSEYEGDADTVMDAVEFVLQNFTEMNKLWVRMQHQGPGR
LREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKETVLPRVLEQVVNCK
DDLSQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMD
RLSNYAASSADVLPEFLQVEAFAKLSNAIGKVIEAQVDMPAVGAITLYVS
LLTFTLRVHPDRLDYVDLVLGACVKKLSSIPKLDDSRATKQVVALLSAPL
EKYNDIVTALTLSNYPRVMDHLDNGTNKVMAMVIIQSIMKNNTCISTVDK
VEVLFELIKGLIKDTDGADVDELDEEDFKDEQNAVARLIHMLYNNEPEEM
LKIICTVRKHTMAGGPKRLPFTVPSLVFSALRLIRQLQGQEGDIVGEEVP
ATPKKIFQLLNQIIEDLSNVPSPELALRLSLQCAEAANDCDLEHVAYEFF
TQAFVLYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYS
ARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQ
MANVARGSSGPVTLFVEILNKYLYFFEKGNQQITGAAIQGLIELINTEKQ
NDSATPDSASDAFLASTMRYIQFQRQKGGIMGEKFESIKL*
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