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Properties
| Property Name | Value |
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| Model evidence | Supporting evidence includes similarity to: 3 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns |
| Product | 5'-3' exoribonuclease 3, transcript variant X1 |
| Note | 5'-3' exoribonuclease 3 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc08v2_t003520.1 ID=Tc08v2_t003520.1|Name=Tc08v2_t003520.1|organism=Theobroma cacao|type=mRNA|length=3336bp
ATGGGAGTGCCAGCGTTCTACAGATGGTTAGCGGAGAAGTATCCGCTTGT
TATAATGGACGTTATCGAGGAAGAACCGGTGGTTATCGACGGCGTCTCCA
TTCCGGTTGATACGAGTAAACCTAACCCCAACAAACTCGAATTCGATAAT
CTTTATCTCGACATGAACGGGATCATTCATCCTTGTTTCCACCCCGAAGA
CAGACCTTCGCCGACAACTTTTGATGAAGTATTTCAGTGCATGTTTGATT
ACATTGATAGATTGTTTGTTATGGTCCGCCCTCGGAAGCTTTTATTTATG
GCCATTGATGGCGTTGCCCCTCGGGCCAAAATGAACCAACAGCGCTCTAG
GCGATTTAGAGCAGCAAAAGATGCTGCAGAGGCGGCAGCTGAAGAAGCAA
GGCTACGAGAGGAGTTTGAGAGGGAGGGCAGAAGGCTTCCTCCTAAAGAG
GAATCACAACTTTTTGATTCAAATGTTATAACACCTGGCACTCCATTTAT
GGCTGTTTTGTCAATTGCTTTGCAGTACTATATCCACCTTAGGTTAAATT
ATGACCCTGGATGGAAAACAGTCAAGGTTATTCTTTCTGATGCAAATGTT
CCTGGTGAAGGAGAACATAAAATTATGTCATATATTCGGCTCCAAAGGAA
CCTTCCTGGTTTTAATCCAAATACACGCCATTGCCTGTATGGTTTGGATG
CTGATTTAATTATGTTGGCCTTGGCCACTCATGAAGTTCATTTTTCAATC
CTCCGAGAGGTTGTCTTTACCCCTGGACAAGATAAATGCTTCGTGTGTGG
TCAGATGGGCCATGTAGCAGCAGATTGTGAAGGAAAGGCAAAGCGAAAGG
CTGGAGAATTTGATGAGAAAGGTGATGGAAAAGCTGTGGCCAGAAAGCCT
TACCAGTTTCTGAACATATGGACACTTAGGGAGTATCTGGAATATGAGAT
GAGAATCCCCAACCTTCCTTTTGAAATGGACTTGGAGCGTGTTGTGGATG
ATTTTATATTCATGTGCTTCTTTGTTGGCAATGATTTTTTACCTCATATG
CCCACACTAGAGATTCGTGAGGGTGCAATCAACTTGCTAATGGCTGCATA
CAAGAAGGAATTGAGGTCATTGGGTGGTTATTTGACCAATGGAAGCAAGC
CAAATTTGAGCAGGGTAGAGCATTTTATCCAGGCTGTGGGATCCTATGAA
GATAAAATATTCCAGAAAAGAGCACGATTGCATCAGCGTCAAGCAGAAAG
AATCAAGCGTGAAAAAGCACAAGCTAGAAGAGGAGATGATGTGGAGCCTC
AAATTCAACCTGATTCTCTGGTTCCAGTTGCTAGATTTCACGGTTCCCGT
CTTGCCTCAGGCCCTTCACCTGCACCATTTCAGCAAACAATGGAGTCTAA
TGGTAATGGATCCTCTGGTCAGCCGCACAAAGTGCGACGTTTATCTTCAG
GAGCCACTATTGGTGCTGCTATCGTCGAAGCAGAGGATAGTATTGAAACA
GAAGAACATGAGAACAAAGAAGAATTGAAAGCAAAACTTAAGGAGTTGAT
CCGTGACAAATCTGATGTTTTTAACTCCAAAAATCACGAGGAAGATAAGA
TTAAACTGGGAGAACCAGGATGGAAAGAAAGGTATTATGAAGAAAAGTTT
TCAGCAAAAACTCCAGAGGAAATGGAAGCAATACGAAAAGATGTTGTTTT
GAGGTACACGGAAGGTCTATGTTGGGTTATGCACTATTACTATGAAGGGG
TTTGTTCTTGGAGGTGGTTTTATCCTTATCATTATGCACCCTTTGCATCT
GATCTAAAGGATCTTGGTCAGCTAGATATTCAGTTTGAGCTGGGCTCCCC
CTTCAAACCATTCAATCAGTTATTGGGGGTTTTTCCTGCGGCAAGTGCCC
ATGCACTTCCTGAGCAGTATAGGAAATTGATGACTGATCCAAATTCACCC
ATTATTGATTTTTACCCAACTGATTTTGAAATTGATATGAATGGGAAGCG
GTTTTCATGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGAACGTC
TTCTTGCAGAGGTTGCAAAAATAGAACATACTTTGACGGAGGAAGAAGCA
CGGAGAAACAGTATAATGTGTGACATGCTTTTTGTGGCAGCATCACACCG
TCTCTCAGAACAAATATTTTCTCTTGACAATCATTGCAGACATTTGACAG
AGAAGGAACGAATTGAAGTCAAGGAGGAAGTCAAACCTGACTTGAGGTCT
GCATGCAGTGATGGGATGAATGGTTACATTTCCCCTTGTGCTGGAGATAC
TCACCCTCCTATATTCAGGTCTCCAATCAAGGACATGGAAGATATATTGG
CCAATGAAGTCATATGCTGCATATATAGACTTCCAAAAGCTCATAAACAT
ATCACCCGTCCTCCAGCTGGAGTTACATTCCCTCCTAAGATGGTGCAATT
CAGTGATATGAAGCCCGAACCTGTGTTATGGCATGAAGATTCTGGAAGGA
GACCTTGGGAAAATGGAAGGTCACCTGCACAAGCTCTTCATTTGATGGAA
AGGCATAACCCTCCGGGAGCCATTTCTGGCCGTAAGCTTGGGGAGGCATC
ACACAGACTCGTTGCTAATAGCTTACAGTTGAAGGGAGATCGTAATGGGT
TCAGTAATGATATACATGCTCCACCACCATTATATGCTGCCGCTCCGTAT
GTTCCACCAGTCAATTCCCATGTAAATTATGGGTTTCATAACCAGGGGCA
GCATAGAATGGTTCCTCCTGGACAAGATTACCCCAGTGCAGGTTACCCCT
TACCTCAAACTCCTTTGCGTCCTCCGTATGCCCATGGCTACAATGAACCC
TATGGTCCTCATCAATACCAAATTCATAACCAAGCAGCTGCCAATAATTT
GCACTACCCTCCGAGACATGATCAGAATGGTGGATCAAGGCACATGCCCA
GGTCTATGGCACAAGTGTCAATGGAGGCTAGTCCTTATCCTTCTCATCAA
GGTGGATATGATGCCAACCGGATATATCAAGCACCTGGAATTGGTAGTCA
TCAGCAGTGGGGTGGTAGAATGGCTCCACAGGCCAACCAGGATGTTTTGG
GAGGCTATGGCCTACATCAACAAGGTGTAGTTAACCGTGGTATTCATAGA
GGTTATGACCATCAGCAACAAAGAGGTAACCAATTGCATCATCAGAGGGG
AGATCATCACCAGAGAGGGAGCCAGCCACACAGGGGCAATCAACAACATG
GCGGCAACCAACAACAAAGAGGAAACTCGTATGCTGCATTAGATAGGCAA
CGCCATAGGAGGGCCCCAGTGGAGAATAACCACTGA back to topprotein sequence of Tc08v2_p003520.1 >Tc08v2_p003520.1 ID=Tc08v2_p003520.1|Name=Tc08v2_p003520.1|organism=Theobroma cacao|type=polypeptide|length=1112bp
MGVPAFYRWLAEKYPLVIMDVIEEEPVVIDGVSIPVDTSKPNPNKLEFDN
LYLDMNGIIHPCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLFM
AIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEARLREEFEREGRRLPPKE
ESQLFDSNVITPGTPFMAVLSIALQYYIHLRLNYDPGWKTVKVILSDANV
PGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLALATHEVHFSI
LREVVFTPGQDKCFVCGQMGHVAADCEGKAKRKAGEFDEKGDGKAVARKP
YQFLNIWTLREYLEYEMRIPNLPFEMDLERVVDDFIFMCFFVGNDFLPHM
PTLEIREGAINLLMAAYKKELRSLGGYLTNGSKPNLSRVEHFIQAVGSYE
DKIFQKRARLHQRQAERIKREKAQARRGDDVEPQIQPDSLVPVARFHGSR
LASGPSPAPFQQTMESNGNGSSGQPHKVRRLSSGATIGAAIVEAEDSIET
EEHENKEELKAKLKELIRDKSDVFNSKNHEEDKIKLGEPGWKERYYEEKF
SAKTPEEMEAIRKDVVLRYTEGLCWVMHYYYEGVCSWRWFYPYHYAPFAS
DLKDLGQLDIQFELGSPFKPFNQLLGVFPAASAHALPEQYRKLMTDPNSP
IIDFYPTDFEIDMNGKRFSWQGIAKLPFIDEERLLAEVAKIEHTLTEEEA
RRNSIMCDMLFVAASHRLSEQIFSLDNHCRHLTEKERIEVKEEVKPDLRS
ACSDGMNGYISPCAGDTHPPIFRSPIKDMEDILANEVICCIYRLPKAHKH
ITRPPAGVTFPPKMVQFSDMKPEPVLWHEDSGRRPWENGRSPAQALHLME
RHNPPGAISGRKLGEASHRLVANSLQLKGDRNGFSNDIHAPPPLYAAAPY
VPPVNSHVNYGFHNQGQHRMVPPGQDYPSAGYPLPQTPLRPPYAHGYNEP
YGPHQYQIHNQAAANNLHYPPRHDQNGGSRHMPRSMAQVSMEASPYPSHQ
GGYDANRIYQAPGIGSHQQWGGRMAPQANQDVLGGYGLHQQGVVNRGIHR
GYDHQQQRGNQLHHQRGDHHQRGSQPHRGNQQHGGNQQQRGNSYAALDRQ
RHRRAPVENNH* back to top
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