Tc08v2_t002500.1

Overview
NameTc08v2_t002500.1
Unique NameTc08v2_t002500.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1371
Properties
Property NameValue
NotePutative Abscisic acid 8'-hydroxylase 4
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productabscisic acid 8'-hydroxylase 4, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591427
GenbankXM_018125371.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g002500Tc08v2_g002500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p002500.1Tc08v2_p002500.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto387402auto387402Theobroma cacaoexon
exon-auto387403auto387403Theobroma cacaoexon
exon-auto387404auto387404Theobroma cacaoexon
exon-auto387405auto387405Theobroma cacaoexon
exon-auto387406auto387406Theobroma cacaoexon
exon-auto387407auto387407Theobroma cacaoexon
exon-auto387408auto387408Theobroma cacaoexon
exon-auto387409auto387409Theobroma cacaoexon
exon-auto387410auto387410Theobroma cacaoexon
exon-auto387411auto387411Theobroma cacaoexon
exon-auto387412auto387412Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto387413auto387413Theobroma cacaoCDS
CDS-auto387414auto387414Theobroma cacaoCDS
CDS-auto387415auto387415Theobroma cacaoCDS
CDS-auto387416auto387416Theobroma cacaoCDS
CDS-auto387417auto387417Theobroma cacaoCDS
CDS-auto387418auto387418Theobroma cacaoCDS
CDS-auto387419auto387419Theobroma cacaoCDS
CDS-auto387420auto387420Theobroma cacaoCDS
CDS-auto387421auto387421Theobroma cacaoCDS
CDS-auto387422auto387422Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t002500.1 ID=Tc08v2_t002500.1|Name=Tc08v2_t002500.1|organism=Theobroma cacao|type=mRNA|length=1371bp
ATGCTGCAGCAGCTTAATCAGGAATGCAGGGCTGATATTCCTCCTGGTTG
TCTAGGATTGCCTTTTATTGGGGAGACTATCCAGTTTATGGCTGCCATCA
ACAGTGGCAAAGGCTTCTACGACTTTGTCCGAGTTCGCAGTCTCAGATAT
GGGAATTGCTTCAAAACCAACATATTCGGACAGACGCAAGTGTTCTTGTC
GAGCACTGAATCAGCTAAAATAATCCTAAACAATGACTTGGGGAGATTCA
CGAAGAGATACATAAAGTCAATTGCAGAGCTAGTGGGGAATCAAAGCTTG
CTCTGTGCTTCTCAGCAGCATCATAAACTGCTCCGTGGCCGTTTAGTCAA
TTTGTTCTCAACAAATTCCATATCTCTGTTAGTTAAACAGTTCGATGAAC
TCATTGTTCATACTCTTAATGGCTGGGAAGATGGAGGCACTGTCATTGTA
CTTGACGAAGCTCTTCAGATAACCTTCAAAGCAATGTGTAAAATGCTGCT
GAGTTTGGAGAGAGGACTAGAATTAGAGCTATTGCAAGAGGATGTAGGTC
ACGTTTGTAAAGCAATGCTTGCATTCCCTCTGAGGTTGCCCTGGACAAGA
TTCTACAAGGGCCTCCAGGCCAGAAAAAGAATCATGAGCACATTGGAGAA
GATCATCAGTAGACGAAGAAGAGGTTTAGATGCTGCTACTGATGACTTTC
TGCAACGTCTTTTGGTGGAAGAGGATAATTATTGTTCGGATGGACTGCAT
AGACTAACCGATGCAGAGATTCAAGATAACATATTGACAATGATTATTGC
AGGTCAAGATACGACAGCAAGTGCAATCACTTGGATGGTCAAGTATCTGG
GGGAGAATGAAGATGTCCTTGACGCAATTAAGCAGGCTGAGCAGCTTCAC
CTCTTGGAAAAAACTTCGAAAAAGTTATTTCTTACCCTGGATGATCTTAA
CGAAATGCCCTATGCTTCTAAGGTGGTTAAAGAATCACTGAGAATGGCAT
CTGTTGTACCATGGTTTCCAAGACTTGTACTTCAAGATTGTGATATTGAA
GGATACAAGATGAAGAAAGGATGGACTGTCAACATTGATGTTAGATCAAT
ACACCTTGATCCAATGGTCTACAGTGAACCCAACAATTTCAATCCTTCAA
GGTTTGATGATGAATCTAAGCCATACAGCTTCCTAGCATTTGGAATGGGA
GCAAGGACTTGCTTGGGGATGAACATGGCCAAAGCTATGATGCTCGTCTT
TCTCCACCGTCTTCTCACAACTTACAAGTGGAAGGTGCTAGACTCGGATT
CAAGTATTGATAAGTGGGCACTCTTTTCGAGACTAAGCAGTGGTTGCCCT
GTGCACGTGACACGTCTTTAG
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protein sequence of Tc08v2_p002500.1

>Tc08v2_p002500.1 ID=Tc08v2_p002500.1|Name=Tc08v2_p002500.1|organism=Theobroma cacao|type=polypeptide|length=457bp
MLQQLNQECRADIPPGCLGLPFIGETIQFMAAINSGKGFYDFVRVRSLRY
GNCFKTNIFGQTQVFLSSTESAKIILNNDLGRFTKRYIKSIAELVGNQSL
LCASQQHHKLLRGRLVNLFSTNSISLLVKQFDELIVHTLNGWEDGGTVIV
LDEALQITFKAMCKMLLSLERGLELELLQEDVGHVCKAMLAFPLRLPWTR
FYKGLQARKRIMSTLEKIISRRRRGLDAATDDFLQRLLVEEDNYCSDGLH
RLTDAEIQDNILTMIIAGQDTTASAITWMVKYLGENEDVLDAIKQAEQLH
LLEKTSKKLFLTLDDLNEMPYASKVVKESLRMASVVPWFPRLVLQDCDIE
GYKMKKGWTVNIDVRSIHLDPMVYSEPNNFNPSRFDDESKPYSFLAFGMG
ARTCLGMNMAKAMMLVFLHRLLTTYKWKVLDSDSSIDKWALFSRLSSGCP
VHVTRL*
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