Tc08v2_t002420.1

Overview
NameTc08v2_t002420.1
Unique NameTc08v2_t002420.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1125
Properties
Property NameValue
NoteOrnithine carbamoyltransferase, chloroplastic
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productornithine carbamoyltransferase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591417
GenbankXM_018125800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g002420Tc08v2_g002420Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p002420.1Tc08v2_p002420.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto387213auto387213Theobroma cacaoexon
exon-auto387214auto387214Theobroma cacaoexon
exon-auto387215auto387215Theobroma cacaoexon
exon-auto387216auto387216Theobroma cacaoexon
exon-auto387217auto387217Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto387218auto387218Theobroma cacaoCDS
CDS-auto387219auto387219Theobroma cacaoCDS
CDS-auto387220auto387220Theobroma cacaoCDS
CDS-auto387221auto387221Theobroma cacaoCDS
CDS-auto387222auto387222Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t002420.1 ID=Tc08v2_t002420.1|Name=Tc08v2_t002420.1|organism=Theobroma cacao|type=mRNA|length=1125bp
ATGGCGGCGATCTCTGGCCACTGCACATTCCGATCACACAAATTGCCTCT
CTCCTCCTCCTCCTTCTCCTCATTCTCCGGCGGAGCTGACCGATCTTCCC
GCATTTCCTTCGCTTCTCCTCTGTCGGTCCGCCGAAACCACATCCCTTGC
CAGGCCTCCTCCGCCACCTCACCACCTTCTTCTTCCGTCAATGGGATAGC
AAAAGGGGAGATGAAGGATTTTTTGCATATTAGCGACTTTGATAAAGCTA
CCATAATGAAGATATTAGACAGGGCTGCAGAGGTCAAGGCACTGTTAAAA
TCAGGAGATAGGTCATTTGTTCCATTTAAGGGTAAGAGTATGGCAATGAT
TTTTGCAAAGCCATCAATGAGGACACGAGTTTCATTCGAGACTGGATTTT
TCTTGCTTGGAGGTCATGCTATATATTTGGGACCAGATGATATCCAGATG
GGTAAACGTGAGGAAACTCGTGATGTTGCTCGTGTTTTATCTCGCTATAA
TGACATCATTATGGCACGTGTATTTGCTCATCAGGACATTCTTGATTTGG
CTAAATATGCTACTGTACCTGTCGTGAATGGCTTGACAGATTACAACCAC
CCTTGTCAAATAATGGCTGATGCCCTCACAATTATTGAACATGTTGGTCA
ATTGGAAGGGACGAAGGTTGTCTATGTTGGGGATGGAAACAATGTTGTGC
ACTCTTGGCTGTTGTTGGCTGCAGTTGTTCCTTTCCACTTTGTCTGTGCC
TGCCCTAAAGGTTTTGAGCCTGATAAAGAGACTGTTAAGAAGGCACAGCG
AGCTGGGATCAGCAAGATTGAGATTACAAATGATCCAAAAGAAGCAGTCA
AAGATGCTGATGTTGTGTATTCAGATGTGTGGGCTAGCATGGGGCAAAAG
GAAGAGGCTGCCTATCGTCGTCAAGTATTTCAAGGATTTCAGGTTGATGA
AGCTCTTATGAAGATAGCAGGCCCCAAAGCTTATTTCATGCATTGCTTGC
CAGCCGAAAGAGGAGTGGAGGTGACTGATGGTGTTATCGAGGCTCCCAAC
TCCATTGTCTTCCCACAAGCGGAAAATCGCATGCATGCACAGAATGCTAT
AATGCTTCATCTACTAGGCGTATGA
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protein sequence of Tc08v2_p002420.1

>Tc08v2_p002420.1 ID=Tc08v2_p002420.1|Name=Tc08v2_p002420.1|organism=Theobroma cacao|type=polypeptide|length=375bp
MAAISGHCTFRSHKLPLSSSSFSSFSGGADRSSRISFASPLSVRRNHIPC
QASSATSPPSSSVNGIAKGEMKDFLHISDFDKATIMKILDRAAEVKALLK
SGDRSFVPFKGKSMAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQM
GKREETRDVARVLSRYNDIIMARVFAHQDILDLAKYATVPVVNGLTDYNH
PCQIMADALTIIEHVGQLEGTKVVYVGDGNNVVHSWLLLAAVVPFHFVCA
CPKGFEPDKETVKKAQRAGISKIEITNDPKEAVKDADVVYSDVWASMGQK
EEAAYRRQVFQGFQVDEALMKIAGPKAYFMHCLPAERGVEVTDGVIEAPN
SIVFPQAENRMHAQNAIMLHLLGV*
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