Tc07v2_t015170.1

Overview
NameTc07v2_t015170.1
Unique NameTc07v2_t015170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1230
Properties
Property NameValue
NoteDNA glycosylase superfamily protein isoform 1
Model evidenceSupporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable GMP synthase [glutamine-hydrolyzing]
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594976
GenbankXM_007022699.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g015170Tc07v2_g015170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p015170.1Tc07v2_p015170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto381755auto381755Theobroma cacaoexon
exon-auto381756auto381756Theobroma cacaoexon
exon-auto381757auto381757Theobroma cacaoexon
exon-auto381758auto381758Theobroma cacaoexon
exon-auto381759auto381759Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto381760auto381760Theobroma cacaoCDS
CDS-auto381761auto381761Theobroma cacaoCDS
CDS-auto381762auto381762Theobroma cacaoCDS
CDS-auto381763auto381763Theobroma cacaoCDS
CDS-auto381764auto381764Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t015170.1 ID=Tc07v2_t015170.1|Name=Tc07v2_t015170.1|organism=Theobroma cacao|type=mRNA|length=1230bp
ATGTGTAGCTCCAATGCCAAGGTGACCGCAGGTGTTGAAATAACACCTGC
GGTGGCCAGGATCAATGGCCGCCCGGTCCTGCAGCCTACTTGCAATCGTG
TTCCTAGCCTTGACCGTCGAAATTCGTTGAAAAAAATACCACCCCTGTCC
CCTCCAACTCCTCCATCACTAGCATCAACGCTCCCAGCAACAAGTGCAAC
TGTTGGTAATGGTGGCAGGGCCAAGGCCTCGTTGACACCACCTATATCCC
CAAAGTCAAAGTCCCCCCGGCCAGCTGCTATTAAGCGAGGCAGTGATCCC
AATGCATTAAACACAAGTTCCGAAAAGGTTATGACTCCTAGAAACATCAC
AAAAACCTTGGAAAGGAAGAAATCAAAAAGTTTCAAAGAGGGAATGGGGA
ATGGATTATCTTCTTGGATTGAGCCATCATTGAGTTATTCTTCTTCTTTG
ATCGTTGAGGCGCCGGGAAGTATTGCTGCAGTTAGAAGGGAACAGATGGC
ACTTCAACAAGCACAAAGAAAGATGAAAATTGCCCACTATGGTAGATCAA
AGTCAGCCAAATTTGAATCTAAAGTCGTTCCTCTTGATACTTCAAGCGCT
ATGACTAAGCCTGATGAGGAAGAGAAGAGGTGCAGTTTTATCACGCCCAA
TTCAGATCCTGTCTATGTGGCTTACCATGATGAAGAATGGGGAGTTCCAG
TCCATGATGACAGTATGCTCTTCGAGTTGTTGGTTCTAAGTGGTGCTCAA
GTTGGCTCAGATTGGATTTCAATCTTGAAGAAACGTCAAGATTTCAGGGA
CGCATTTTCAGGCTTTGATGCAGAAACTGTAGCCAAGTTCACTGATAAGG
AAATGACCACAATTAGCTCAGAATATGGTATTGACATAAGCAGAGTTCTA
GGTGTTGTGGACAACTCCAACCGTATTCTCGAGGTGAAGGGGGAGTTTGG
ATCATTTGATAAATACATATGGGGATTTGTGAATCACAAGGCAATCTCCA
CGCAATACAAATTTGGTCACAAGATCCCAGTTAAGACATCAAAGTCAGAG
AGCATAAGCAAGGACATGTTGAGGAGGGGGTTTAGGTGTGTTGGACCAAC
GGTGGTCCACTCCTTCATGCAAGCCGCCGGTCTAACCAATGACCACCTCA
TCACATGCCACAGGCACCTCCCTTGCACCCTGTTAGCTGCCTCATCTATA
GATGGATTGACATTTAAAAGGAGACAATGA
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protein sequence of Tc07v2_p015170.1

>Tc07v2_p015170.1 ID=Tc07v2_p015170.1|Name=Tc07v2_p015170.1|organism=Theobroma cacao|type=polypeptide|length=410bp
MCSSNAKVTAGVEITPAVARINGRPVLQPTCNRVPSLDRRNSLKKIPPLS
PPTPPSLASTLPATSATVGNGGRAKASLTPPISPKSKSPRPAAIKRGSDP
NALNTSSEKVMTPRNITKTLERKKSKSFKEGMGNGLSSWIEPSLSYSSSL
IVEAPGSIAAVRREQMALQQAQRKMKIAHYGRSKSAKFESKVVPLDTSSA
MTKPDEEEKRCSFITPNSDPVYVAYHDEEWGVPVHDDSMLFELLVLSGAQ
VGSDWISILKKRQDFRDAFSGFDAETVAKFTDKEMTTISSEYGIDISRVL
GVVDNSNRILEVKGEFGSFDKYIWGFVNHKAISTQYKFGHKIPVKTSKSE
SISKDMLRRGFRCVGPTVVHSFMQAAGLTNDHLITCHRHLPCTLLAASSI
DGLTFKRRQ*
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