Tc07v2_t013860.4

Overview
NameTc07v2_t013860.4
Unique NameTc07v2_t013860.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length957
Properties
Property NameValue
NoteThiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productthiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594871
GenbankXM_018125136.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g013860Tc07v2_g013860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p013860.4Tc07v2_p013860.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto379575auto379575Theobroma cacaoexon
exon-auto379576auto379576Theobroma cacaoexon
exon-auto379577auto379577Theobroma cacaoexon
exon-auto379578auto379578Theobroma cacaoexon
exon-auto379579auto379579Theobroma cacaoexon
exon-auto379580auto379580Theobroma cacaoexon
exon-auto379581auto379581Theobroma cacaoexon
exon-auto379582auto379582Theobroma cacaoexon
exon-auto379583auto379583Theobroma cacaoexon
exon-auto379584auto379584Theobroma cacaoexon
exon-auto379585auto379585Theobroma cacaoexon
exon-auto379586auto379586Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto379587auto379587Theobroma cacaoCDS
CDS-auto379588auto379588Theobroma cacaoCDS
CDS-auto379589auto379589Theobroma cacaoCDS
CDS-auto379590auto379590Theobroma cacaoCDS
CDS-auto379591auto379591Theobroma cacaoCDS
CDS-auto379592auto379592Theobroma cacaoCDS
CDS-auto379593auto379593Theobroma cacaoCDS
CDS-auto379594auto379594Theobroma cacaoCDS
CDS-auto379595auto379595Theobroma cacaoCDS
CDS-auto379596auto379596Theobroma cacaoCDS
CDS-auto379597auto379597Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t013860.4 ID=Tc07v2_t013860.4|Name=Tc07v2_t013860.4|organism=Theobroma cacao|type=mRNA|length=957bp
ATGGCCTCAGCAATTGACAGAAGAATTAATTTTTCTACGCAATCTCTATC
CACAAATGATACGGTTGTTTCTGTTGATTGGCTCCATGCTAATCTAAGGG
AGCCTGATATGAAGGTACTGGATGCATCCTGGTACATGCCAGATGAGCAG
AGGAATCCTATTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCTCTTTT
CTTTGATGTTGATGGAATAGCGGATCGAACTACAAAGTTGCCACATATGC
TGCCATCTGAGGAAGCCTTTGCTGCTGCGGTGTCTGCTCTTGGCATCCAG
AATAATGATGGACTGGTTGTTTATGATGGAAAGGGAATTTTTAGTGCAGC
ACGTGTCTGGTGGATGTTCCGAGTCTTTGGGCATGACCGAGTATGGGTGT
TAGATGGAGGCCTCCCAAGGTGGCGTGCATCAGGATATGATGTTGAATCT
AGTGCTTCTAGTGATGCTATTTTGAAAGCCAGTGCTGCCAGTGAGGCTAT
AGAGAAAGTCTATCAGGGACAAACAGCTGGACCGGTCACATTTCAGACAA
AATTTCAGCCACATCTTGTCTGGACACTCGATCAGGTTAGAAGAAACATT
GAGGAAAAAACTCACCAACATATAGATGCCCGCTCCAAGCCCCGATTTGA
TGGTGCTGCACCAGAACCTCGCAAGGGAATAAGAAGTGGCCATGTCCCTG
GCAGCAAATGTATTCCTTTTCCCCATATGTTGGATGCTTCACAGACACTT
TTACCCGCTGATGAACTTAAGAAACGATATCAGGAAGAAGGCATCTCATT
GGAAGGCCCTGTTGTTACTTCTTGTGGCACTGGTGTAACTGCTTGTGTTC
TGGCATTGGGCCTCCATCGACTTGGGAAGTCTGATGTTGCTGTGTATGAT
GGATCTTGGACCGAATGGGGTGCACAATCAGACACACCTGTTGACACTTC
ACTGTAA
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protein sequence of Tc07v2_p013860.4

>Tc07v2_p013860.4 ID=Tc07v2_p013860.4|Name=Tc07v2_p013860.4|organism=Theobroma cacao|type=polypeptide|length=319bp
MASAIDRRINFSTQSLSTNDTVVSVDWLHANLREPDMKVLDASWYMPDEQ
RNPIQEYQVAHIPGALFFDVDGIADRTTKLPHMLPSEEAFAAAVSALGIQ
NNDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVES
SASSDAILKASAASEAIEKVYQGQTAGPVTFQTKFQPHLVWTLDQVRRNI
EEKTHQHIDARSKPRFDGAAPEPRKGIRSGHVPGSKCIPFPHMLDASQTL
LPADELKKRYQEEGISLEGPVVTSCGTGVTACVLALGLHRLGKSDVAVYD
GSWTEWGAQSDTPVDTSL*
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