Tc07v2_t013860.1

Overview
NameTc07v2_t013860.1
Unique NameTc07v2_t013860.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1137
Properties
Property NameValue
NoteThiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productthiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594871
GenbankXM_007022534.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g013860Tc07v2_g013860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p013860.1Tc07v2_p013860.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto379497auto379497Theobroma cacaoexon
exon-auto379498auto379498Theobroma cacaoexon
exon-auto379499auto379499Theobroma cacaoexon
exon-auto379500auto379500Theobroma cacaoexon
exon-auto379501auto379501Theobroma cacaoexon
exon-auto379502auto379502Theobroma cacaoexon
exon-auto379503auto379503Theobroma cacaoexon
exon-auto379504auto379504Theobroma cacaoexon
exon-auto379505auto379505Theobroma cacaoexon
exon-auto379506auto379506Theobroma cacaoexon
exon-auto379507auto379507Theobroma cacaoexon
exon-auto379508auto379508Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto379509auto379509Theobroma cacaoCDS
CDS-auto379510auto379510Theobroma cacaoCDS
CDS-auto379511auto379511Theobroma cacaoCDS
CDS-auto379512auto379512Theobroma cacaoCDS
CDS-auto379513auto379513Theobroma cacaoCDS
CDS-auto379514auto379514Theobroma cacaoCDS
CDS-auto379515auto379515Theobroma cacaoCDS
CDS-auto379516auto379516Theobroma cacaoCDS
CDS-auto379517auto379517Theobroma cacaoCDS
CDS-auto379518auto379518Theobroma cacaoCDS
CDS-auto379519auto379519Theobroma cacaoCDS
CDS-auto379520auto379520Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t013860.1 ID=Tc07v2_t013860.1|Name=Tc07v2_t013860.1|organism=Theobroma cacao|type=mRNA|length=1137bp
ATGGCATCATCTCTTCTCTCCAGAACTCTCTTGGGTCACCGCTTGGGTCA
ATTCTCATCCTCTCTCACACACAAACCCCTGATTTTCTCTTCTCTTTTCA
ATTTGCAGAAGAGACAGCTTCACGTACAGGCTGAGCCTACCTATACACCA
TATAAAACATCTGGTCGGCCTTCTCGTTTTATGGCCTCAGCAATTGACAG
AAGAATTAATTTTTCTACGCAATCTCTATCCACAAATGATACGGTTGTTT
CTGTTGATTGGCTCCATGCTAATCTAAGGGAGCCTGATATGAAGGTACTG
GATGCATCCTGGTACATGCCAGATGAGCAGAGGAATCCTATTCAAGAGTA
TCAGGTTGCTCACATTCCTGGTGCTCTTTTCTTTGATGTTGATGGAATAG
CGGATCGAACTACAAAGTTGCCACATATGCTGCCATCTGAGGAAGCCTTT
GCTGCTGCGGTGTCTGCTCTTGGCATCCAGAATAATGATGGACTGGTTGT
TTATGATGGAAAGGGAATTTTTAGTGCAGCACGTGTCTGGTGGATGTTCC
GAGTCTTTGGGCATGACCGAGTATGGGTGTTAGATGGAGGCCTCCCAAGG
TGGCGTGCATCAGGATATGATGTTGAATCTAGTGCTTCTAGTGATGCTAT
TTTGAAAGCCAGTGCTGCCAGTGAGGCTATAGAGAAAGTCTATCAGGGAC
AAACAGCTGGACCGGTCACATTTCAGACAAAATTTCAGCCACATCTTGTC
TGGACACTCGATCAGGTTAGAAGAAACATTGAGGAAAAAACTCACCAACA
TATAGATGCCCGCTCCAAGCCCCGATTTGATGGTGCTGCACCAGAACCTC
GCAAGGGAATAAGAAGTGGCCATGTCCCTGGCAGCAAATGTATTCCTTTT
CCCCATATGTTGGATGCTTCACAGACACTTTTACCCGCTGATGAACTTAA
GAAACGATATCAGGAAGAAGGCATCTCATTGGAAGGCCCTGTTGTTACTT
CTTGTGGCACTGGTGTAACTGCTTGTGTTCTGGCATTGGGCCTCCATCGA
CTTGGGAAGTCTGATGTTGCTGTGTATGATGGATCTTGGACCGAATGGGG
TGCACAATCAGACACACCTGTTGACACTTCACTGTAA
back to top

protein sequence of Tc07v2_p013860.1

>Tc07v2_p013860.1 ID=Tc07v2_p013860.1|Name=Tc07v2_p013860.1|organism=Theobroma cacao|type=polypeptide|length=379bp
MASSLLSRTLLGHRLGQFSSSLTHKPLIFSSLFNLQKRQLHVQAEPTYTP
YKTSGRPSRFMASAIDRRINFSTQSLSTNDTVVSVDWLHANLREPDMKVL
DASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTKLPHMLPSEEAF
AAAVSALGIQNNDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR
WRASGYDVESSASSDAILKASAASEAIEKVYQGQTAGPVTFQTKFQPHLV
WTLDQVRRNIEEKTHQHIDARSKPRFDGAAPEPRKGIRSGHVPGSKCIPF
PHMLDASQTLLPADELKKRYQEEGISLEGPVVTSCGTGVTACVLALGLHR
LGKSDVAVYDGSWTEWGAQSDTPVDTSL*
back to top